Corynebacterium pseudopelargi: CPPEL_06680
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Entry
CPPEL_06680 CDS
T07012
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpso
Corynebacterium pseudopelargi
Pathway
cpso03030
DNA replication
cpso03410
Base excision repair
cpso03420
Nucleotide excision repair
cpso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPPEL_06680 (ligA)
03410 Base excision repair
CPPEL_06680 (ligA)
03420 Nucleotide excision repair
CPPEL_06680 (ligA)
03430 Mismatch repair
CPPEL_06680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpso03032
]
CPPEL_06680 (ligA)
03400 DNA repair and recombination proteins [BR:
cpso03400
]
CPPEL_06680 (ligA)
Enzymes [BR:
cpso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPPEL_06680 (ligA)
DNA replication proteins [BR:
cpso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPPEL_06680 (ligA)
DNA repair and recombination proteins [BR:
cpso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPPEL_06680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPPEL_06680 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPPEL_06680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPPEL_06680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AZA09447
UniProt:
A0A3G6IV21
LinkDB
All DBs
Position
complement(1408098..1410146)
Genome browser
AA seq
682 aa
AA seq
DB search
MTEHRNDPHQQWQQLAADIRHHRELYYNGTPELSDQAFDELFLKLQRLEQEYPELRTPDS
PTREVGAPVSEQSSFANVAHLERMLSLDNVFSEDEMRDWLQRTEAPAYLCELKIDGLSLD
LVYRNGVLERAATRGDGRVGEDVTENAKVIEGIPHELQASDDYPIPALLEVRGEVFIAVE
DFGLVNEQRQLEGGKPFANPRNAAAGSLRQHDVASVRKRKLRMICHGIGAREGFQPESQH
QAYEALAAWGLPVSPYTKQVTSADAVLKQVRYWAKHRGDASHEMDGLVVKVDDFALQRQL
GATSRAPRWAIAYKYPPEEAVTKLNDIQCGVGRTGRVTPFAILEPVFVSGSTVSMATLHN
QTEVKRKGVLIGDHVVVRKAGEIIPEVLGPVVEQRTGNEREFVFPEHCPSCGTTLAPQKQ
GDADWRCPNRRSCPAQLSARLTYIASRAVFDIEALGEKAAEDLVASQVLEDEGGLFSLSR
EDLLKTKIYVRARDGKLNQSGEKLLRNLQVAKKTDLWRVIVALSIRHVGPTAARAIAGKY
HSLEAAQAASVEELASVEGVGTVIAQSFHEWFEQDWHREIVRQWAADGVTMESNLEALPE
QTLEGLSIVVTGGLEGFTRDSVKEAILARGGKAASSVSKKTDYVVVGANAGSKEQKARDL
GLNILDEQAFVRLLEQGPAALS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagcaccgcaacgatcctcatcagcaatggcaacaactcgccgcagatatccgc
catcaccgagagctgtattacaacggcactcccgagctcagcgaccaagccttcgatgag
ctttttctcaagctacagcgcttagagcaggaatatcccgagctacgcaccccagatagc
cccaccagggaagtaggcgcgccggtatcggagcagtccagctttgccaacgtcgcccac
ctcgagcggatgctgagcttggacaatgtctttagcgaagatgagatgcgtgactggttg
cagcgcaccgaagcgccggcatacctgtgcgagcttaaaatcgatgggctttccttagac
ctggtgtaccgaaacggggtgctagaaagggcagccacccgaggcgatggccgcgtgggt
gaagacgtcaccgaaaacgcgaaggtgatcgagggtattccgcatgagcttcaggcctct
gatgattatccaattcctgccttgcttgaggtccgcggtgaggtatttatcgccgtagaa
gattttggcttagtcaatgaacagcgccagctcgaaggtgggaagccttttgccaatccc
cgcaacgcggctgctggatcactcagacagcacgatgtggcatcggtgcgtaaacgcaag
ctgcggatgatctgccacggcattggtgcgcgagagggcttccagcccgaatcccagcat
caggcctatgaggcgcttgcggcatggggattgccagtatcgccctataccaagcaggtc
actagtgcggatgcggtgctcaagcaagtgcggtattgggcaaagcaccgcggcgatgcc
tcccatgaaatggatggcttggtagtcaaggtggatgatttcgcgctccagcgacaactc
ggtgccacctcccgtgcaccgcgctgggccattgcctataagtatccaccagaagaggcc
gtgaccaagctcaacgacatccaatgcggtgttggccgcaccggtagggtgacgcccttt
gccattttggagcctgtgttcgtctcgggctctaccgtttccatggcaacgctgcacaac
cagactgaggtcaagcgcaagggcgtgctcattggcgatcatgtggtggtgcgcaaagca
ggggagatcatcccggaggtgcttggccccgtggttgagcagcgcacaggtaacgagcgc
gaatttgtctttcccgagcactgcccaagctgtggcaccaccttggcgccgcaaaagcaa
ggcgatgccgactggcgttgcccaaaccgtcgctcttgcccagcgcagctttctgcccgc
ctgacttacatcgctagccgtgccgtattcgatatcgaggcgcttggagaaaaagccgcc
gaagatctcgtggcttctcaagtgttagaagatgaaggcgggctattttcgctcagccgt
gaggatcttttaaaaaccaagatctatgtgcgtgcccgcgatggcaagctcaaccaaagt
ggtgagaagctgctgcgcaatctccaggtggctaagaagacagatctgtggcgtgtgatc
gtggcgctttctattcgccacgtagggcctaccgccgcccgggcgatcgccgggaagtac
cacagcttagaggcagcccaagccgcaagcgtagaagagcttgccagcgtggaaggtgtg
ggcacagtgattgcgcagagcttccatgagtggtttgagcaagactggcaccgcgagatc
gtgcggcagtgggcggccgatggtgtgaccatggaatccaaccttgaggccttgccggag
caaacgctcgagggcttgagcattgtggtcacaggtgggctcgaagggtttacccgcgat
tccgttaaagaagccatccttgcccgaggcggcaaggccgcgagttcagtgtcgaaaaag
accgactatgtggtggttggcgccaatgcgggatccaaggagcaaaaggcacgcgatctt
ggcctgaacatccttgatgaacaggcctttgtgcgcttgcttgagcaaggtcctgcagcg
ctgagctag
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