Corynebacterium pseudotuberculosis FRC41: CPFRC_04370
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Entry
CPFRC_04370 CDS
T01277
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpu
Corynebacterium pseudotuberculosis FRC41
Pathway
cpu03030
DNA replication
cpu03410
Base excision repair
cpu03420
Nucleotide excision repair
cpu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPFRC_04370 (ligA)
03410 Base excision repair
CPFRC_04370 (ligA)
03420 Nucleotide excision repair
CPFRC_04370 (ligA)
03430 Mismatch repair
CPFRC_04370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpu03032
]
CPFRC_04370 (ligA)
03400 DNA repair and recombination proteins [BR:
cpu03400
]
CPFRC_04370 (ligA)
Enzymes [BR:
cpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPFRC_04370 (ligA)
DNA replication proteins [BR:
cpu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPFRC_04370 (ligA)
DNA repair and recombination proteins [BR:
cpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPFRC_04370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPFRC_04370 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPFRC_04370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPFRC_04370 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADK28663
LinkDB
All DBs
Position
922545..924581
Genome browser
AA seq
678 aa
AA seq
DB search
MTDSNIELRRQWDELAEQVRYHRDAYYNDTPEISDQDFDALFRTLQKLEEEHPELAVPDS
PTLEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRTPAQAYLTELKIDGLSLD
LIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRGEVFIAVE
DFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQGFTPASQY
HAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDSISEQRAL
GATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTVSMATLHN
QTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREFIFPTLCPSCGTRLAPQKE
DDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKAAEDLIRTGVLIDEAGLFELTE
EDLLKTRVYTTKKKTLNATGSKLLANLEQSKKADLWRVLVALSIRHVGPTAARALASRYH
SMDALREASAEEIADTEGVGAIIAQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQ
TLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASTSVSKKTDYVVVGENAGSKETKARELG
LTILDESGFIRLLENGSV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgactgattccaatatcgaactccgcagacaatgggacgaactcgctgaacaagtgcga
tatcatcgtgatgcgtattataacgacacacctgagatcagtgaccaagattttgatgcg
ttgttccggacgctccaaaagcttgaagaggaacaccccgaactcgcagttccagacagc
cccacgctagaagtcggagcccctgtggctttgagctctagttttaataatgtagagcac
ctggaacgcctcatgagcttagataatgtgtttgacgccgcagagctttctgagtggttg
caaagaacaccggcgcaggcttatctaaccgagttgaagatcgatggactttcactagac
cttatttaccgcgatggaaaattatggcgtgcggctactaggggcgatggcaggatcggt
gaagacgtcaccgaaaacgcaaaagtgattgctgatgtgccgcatcgacttaaggaaaac
gcagagtttcctatccctgaactgctggaggttcgaggtgaagtttttatcgctgtagaa
gactttgctgcggttaatgaacaacgccaattggagggaggaaaaccctttgctaatccg
cgcaatgcggctgccggctcattaagacaaaaagacgttgaagctgttaaaaaacgcagg
cttcggatgatctgtcatggacttggtgctactcagggttttactcccgcgtcgcagtac
catgcgtatgaggcattggcagcttggggcctgcctgtttctccttataccgagcttgtc
cagtcagccgcagaagtgcaggaaaaggttctatattgggccgagcatcgccacgacgca
gcgcatgagatggatggagttgtagttaaggtagacagcatctcagagcagcgagcgttg
ggggctacagccagagctccgcgctgggctatcgcctacaaatacccgccagaagaagtt
acaacggaactcttagacattcaggtaggagtgggcaggaccgggcgtgttactcccttt
gccgttatgcgtccagtctttgtcgccggatctactgtgtctatggctacgctgcacaac
caaacggaagtaaaacgtaaaggagtgctcatcggggacaccgtggtgatccgcaaagca
ggtgaggtgatcccagaagttcttgggccggtagtggaaaaacgagacgggactgagcgc
gagtttattttccctactttgtgtcctagctgtggtacccggcttgcgccgcaaaaagag
gacgatgcggattggcgttgccctaattctcaatcgtgcccggcgcagttgagcacgcgt
ttaacctatctagcaggacgcggcgcttttgatattgaagctttaggagaaaaagcagcg
gaggatctcatccgtacaggggtgcttatcgacgaagccgggttgtttgagcttacagaa
gaagacctactaaagactcgcgtgtacacaacaaagaagaagacgctgaatgcgactggc
tccaagttgttagccaacttggagcaatcgaaaaaagctgatctttggcgggtgcttgtc
gcgctatctattagacacgttggtcccaccgccgcccgggcattagcgtcccgttatcac
tctatggacgcattgcgagaagccagcgcggaagagattgcggatactgaaggcgttgga
gcgatcatcgcacaaagttttaaagattggtttgaagttgattggcacgcccacatcgta
gagcagtgggcacgtgctggtgtgacgatggccgaagagacctcccaattgccggagcaa
acactggcgggtatgactgttgtggtcactggttctttggaaggctttagtcgcgattct
gctaaggaagccatcatcagccgtggcggtaaagcctcaacatcggtgtctaaaaaaacc
gattatgttgtggttggagaaaacgccggttctaaggaaactaaagcaagagaactagga
ctcaccattcttgacgagtccggttttatccgactactagaaaacggatcggtataa
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integrated database retrieval system
