Chiloscyllium punctatum (brownbanded bambooshark): 140477101
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Entry
140477101 CDS
T11285
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpun03036
]
140477101 (smchd1)
03400 DNA repair and recombination proteins [BR:
cpun03400
]
140477101 (smchd1)
Chromosome and associated proteins [BR:
cpun03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
140477101 (smchd1)
DNA repair and recombination proteins [BR:
cpun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
140477101 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
HATPase_c_3
SMC_hinge
HATPase_c
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
140477101
NCBI-ProteinID:
XP_072426483
LinkDB
All DBs
Position
5:complement(56826781..56954679)
Genome browser
AA seq
2061 aa
AA seq
DB search
MAAEQKRLPPAVTPDSTAGAGAGASAEKDSNKKVVFVFDRRLGDSLEKCLDLSSWNTFAE
FKSAVCRAFDITAGNNFVITTTNRKEIKSQNFEKSVKDGITLYILNSVDQILPSATRERI
DFLPHYDTLVKSGMYEYYASEGQTPLPFAFAELIDNSLSATANNKGIRNIQVRLLFDESQ
GKSAVAVIDNGRGMTSKQLNNWAVYRLSKFTRTDDDIERFVSWIQTCSSKSSNPMSPNYC
DHSGYVRPPMVPRSLNSDISYFGVGGKQAVFFIGQSTRMITKPAESQDVHELMLSKDDFE
KKEKNKEAIYSGFIRNRKATDSMHITSEDERFLHSLIVEEKDKESFTAVIITGVQQAHVQ
YLKNYFHLWTRQLAHIYHYYIHGPKGNDMTATKEVGPFNNIDIEISMFEKGKVPKIVNLR
EIKDDMQTLFINTAADCFEFKAHVEGEGVVEGVIRYHPFLYDKETYPEDVSCTFNTVEDD
EEDCYSVDKGARGKRPIFECFWNGRLIPYTTVEDFEFCAPPKKRGLVALECYNRISGVLF
TNDKFQVSTNKLTFMDLELKLKDKNTLFTRVVNGQEQRMKIDREFAMWLKECHEKYDKQI
KFSCYKGTITRSDLPSKRMQSPWALYAGIEWDGKTFKAGDLVKTIKTMPIIYGRIVRFLL
YGDHEGDVYSTGGEVQVAVEPQALYDEVKTIPISKLDRTVAVSVIKKYIEDEMARLPDKL
SVTWPEGDALTANESRQAGMPIGALRIEILNKKGETMQKLPGTSHGGSKKLLVELKVIWH
SSGGDKEIVSHISQHGGKWPYWFKKMENINKLGNYTLKLQVVLNESNADTYAGRSLPSRI
FKFTVTEGKPYKFTVGLLDPPFRIAVPFNIPLDLQDEFGHSTQPTSVIKPIVEASVPCSG
LDLHYEAFVAKGTSFIIKGVTARGSVTTCQGKNFTLKVILPGLKEDSQTLKIRLLPGPPR
ELRIKPDSNKVVIENGTTFPFQAEVLDEAGNITAQPKLVVHCKFLGAPNLPVYTVDCSNT
GTGILTGPVIHVQNIKKDQTLKARIEISSCKDVPAVEKIIKLLPSTQVTKLQIFSIDGQK
AIPIKHQDEIDWIAGDVIHHLIFRMYDEGDRQIVVNSSLAEKIKVNWTPRVNREHLIQGL
LPDVKVPCSIKDIRYCQVSYQDDHISLESAFTVKPQPDEPRLLKCSLKGLSTVQMGEELQ
GEIHATLSDRHGNQIQTLTSSCVDLLGVAGEGLDKSKLKVTWQENTQNMVVRGIKFVPGA
TGQKELCFAWRDFVDYVRIHLTAGPPTQISILEWGNSEESLSVVNGKTIDKPLVVQLCDA
WGNPSPEPMIKVVLLKESGLKLSPTPQLQKTDENGRASFGVFQIFAARGEYTIQAKAVVN
KSAVDGPVIKLNVVPDPDKPVSLHVDYNKNAAFVAGGFLTEFAVSVVSEDGSAMKNIKPA
DLTMRMWRGQRPSSNPTILNCNKARDGDREGYFYFRDKMLPERTGVHTIQFVYSQDKTVL
CGEQITFHVVPGEPVKLMPEEQPATPTVSNVRAVTHRTLVKSLCLKVMDEYNNPTGEDIC
GKLVVTIRSATEDESEVPQFQGKLSSLEFELNQGSSVISNLVLAENCPGRDSTEYMLIFE
PTISKPVKRNPLPPYILSFMFYNDFKKQQQMTTLTKEKDQLSLSIIAYRSLFDTTNQLIS
EMKCQAHEATAKEAHLRNELQKQKINIAEVSTIQGIDTVLKQMKLERDRILKLPRRTCSL
SNYTRNSADVLGKIAHLAMIEDDEVARVISWHMASDMDCVVTLTTDAARRIFDESQGRQQ
VLPLDSIYRKNLPDAKRPLPHMRNGKCHFKPEGNPIFVRELLIFSENVEQCHTVFGMLLG
DTIILDDLKAANQYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPQIDKLRGLVFG
APLPKAYHTLNSQIDLIQQYRSALIKLNNVNQELDLQLKYLGSPEMTLKHKELNEQENQL
KQIEQQLGMTPTRATSDNSPKALALDLSDGQAPSKKMRREIAKKTYSAEEWVSIPLKKSQ
QPPSGSGMDTNGSTLSRKRKA
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgagcagaagcggctcccgccggccgtcacccccgactccacagccggcgcc
ggcgccggcgccagcgccgagaaggacagcaacaaaaaggtggtttttgtcttcgaccgc
cgcctcggagactctctggagaaatgtctggacctcagcagctggaacacgtttgccgag
ttcaagagcgccgtgtgtcgggcttttgatattactgcaggaaataattttgtaattaca
acgacaaataggaaagaaattaaaagtcaaaactttgagaaaagtgtcaaagatggcatc
accttatatatacttaactcagtcgaccaaatactgccctcagctacaagggagcgaatt
gactttcttcctcactatgatacgttggttaaaagtggaatgtatgaatactatgccagt
gaaggacagactccattaccatttgccttcgctgaattgatagataattccttatctgca
acagccaataacaaaggaattcgcaatatacaggtccgactgttgtttgatgaatcacaa
ggtaaatcagcagttgctgtaattgacaacgggaggggaatgacatctaagcagcttaat
aactgggctgtctatcgactttccaagttcaccagaacagatgatgacattgaaaggttt
gtttcctggatacaaacatgctcatctaaatcctccaatcctatgagcccaaattattgc
gatcattcaggatatgtccgtccacccatggtgcctcgcagtctcaatagtgacatttct
tattttggtgttggtgggaaacaagcggttttcttcattggccaatcaactagaatgata
accaaaccggctgaatctcaagatgtacatgaattaatgctttctaaagatgattttgaa
aagaaggagaaaaataaagaagcaatatatagtggattcatccgaaacagaaaggcaacc
gattcaatgcacatcaccagtgaagatgaacgattcttgcatagtctcattgtggaagaa
aaggacaaggaaagttttactgcagtaattatcacaggagttcagcaggcccatgtgcag
tatctgaaaaactacttccacctctggactagacagttggcccacatataccactactac
attcatggacctaaaggaaatgatatgacagctactaaagaagtaggaccctttaacaac
attgatatagaaatctcaatgtttgagaagggaaaagtcccaaagatcgtgaatttaagg
gaaataaaagatgacatgcagactctcttcatcaacacagctgcagactgctttgaattt
aaagcacacgtagaaggagaaggtgttgttgaaggagtaatacgttatcatccattcctc
tatgacaaagaaacctatcctgaagacgttagctgtacattcaatactgttgaggatgat
gaggaagactgttattctgttgataaaggagccagaggcaaaagaccaatatttgaatgc
ttttggaatggaagactgattccttacaccacagtggaagattttgagttttgtgcaccc
cccaagaaaagaggacttgtggctctggaatgttacaacaggatctcgggggtgcttttt
accaatgataagtttcaggtcagcaccaacaagttgacatttatggatttagaactgaag
ttgaaggataagaacacacttttcacacgtgttgtgaatggccaggagcaaagaatgaag
atagacagagaatttgcaatgtggcttaaagaatgccatgagaaatatgacaagcaaata
aagttcagctgttataaaggcacaatcacaaggagtgatctaccatctaaaagaatgcag
agtccttgggctttatatgctggtattgaatgggatggcaagaccttcaaagcaggagac
ttggttaaaactatcaaaacgatgccaataatttatggacgcatagttcgtttcctcctt
tatggtgaccatgaaggtgatgtgtattctactggaggagaagtacaagtagctgtggag
ccccaagctttgtatgatgaggtgaagaccattccaatctctaaattggatagaactgta
gctgtttctgtcatcaagaagtatatagaagatgaaatggcaagactccctgataaacta
tctgtaacctggccagaaggagatgcacttactgcaaatgaaagcagacaagcaggaatg
cctataggtgctttaagaatagaaattctcaataaaaaaggcgaaactatgcagaaactt
ccaggaacaagccatggtggatcaaaaaaactgttggttgagctgaaagttatttggcat
tcttctggtggtgacaaagaaatagtttctcatatcagtcaacatggtggcaagtggccc
tattggttcaaaaagatggaaaatattaataaacttggaaactacacattaaaattacaa
gtggtattgaatgaaagtaatgcggacacatatgcagggaggtctcttccgagcagaatc
ttcaaattcactgttacagagggaaaaccgtataaatttacagttggattgttggatcct
ccatttcgcattgctgtgcctttcaacattcctctagatttgcaagatgaatttgggcat
tctacacaaccaacctctgttatcaagccaattgtggaggcaagtgtgccttgcagtggg
ttggacctacattatgaagcctttgtggcaaaaggaacaagtttcatcattaagggtgta
acagctcggggctctgtgaccacttgccaaggcaagaacttcactctgaaagtaatcctc
cctggattgaaggaagattcgcaaacattaaaaattagactgttgcctggtccacctcgt
gagcttagaattaagccagattctaataaagtggttattgaaaatggaaccaccttccct
ttccaagctgaagtgctggatgaagcaggaaatattacagcgcagcccaaattggtggta
cattgcaagtttcttggtgccccaaatttgcctgtgtatacagtggattgtagtaacact
ggtactggaattttaactggccctgtgatacatgtacagaatattaagaaagaccaaacg
ctgaaagcaagaattgagatatcaagctgtaaagatgtgccagcagtggagaagataatt
aaattgctacctagcactcaagttacaaagcttcagatcttcagcatagatggacaaaaa
gcaattcctattaaacatcaggatgaaattgactggattgctggagacgtaattcaccat
cttatctttcggatgtatgatgaaggcgatcggcagattgttgttaattcatctctcgct
gagaaaattaaggtcaactggacccctcgggtaaatagagagcacttaattcaaggattg
ttgcctgatgttaaagtaccatgctccattaaggatatacgttactgtcaggtctcatat
caagatgatcacatttcattggaaagtgcatttacggtcaagccacagccagacgaacct
agacttttgaaatgttcattgaaaggattaagtactgttcagatgggtgaagagctacaa
ggagaaatacatgcaacactttctgaccgacatggcaatcagattcaaaccctgacatca
tcttgtgtagacttattgggagtagctggagaaggactggacaaaagtaaactgaaagtg
acttggcaggaaaatactcagaatatggttgttcggggaataaagtttgtacctggagcc
actggtcagaaagaactttgttttgcttggcgtgattttgtggattatgtaagaattcat
ctaactgcaggacccccaacccaaattagcatccttgaatggggaaattcagaagagtcc
ctctcggttgtcaatggtaagaccattgataagcctttggttgtacagctttgtgatgct
tggggaaatccttctcctgagcctatgattaaagttgttctactaaaagaaagtggccta
aagctatctccaaccccacaactgcagaaaacagatgaaaatggaagggcaagttttggt
gtgtttcaaatttttgcagcaaggggagaatatacaatacaagctaaagccgtcgttaat
aaaagtgcagttgatggccctgtgatcaaactaaatgtagtaccagaccctgacaaacca
gttagcttgcatgtagactacaacaaaaatgcagcttttgttgctggtggatttttaaca
gaattcgcagttagtgttgtttctgaagatggcagtgcaatgaagaatatcaaaccagca
gacctcaccatgcgaatgtggaggggtcaacgcccatcatccaatccgacaattctaaac
tgcaataaagcacgagatggtgacagagaaggatatttttatttcagggataaaatgctt
ccagagcggacaggagtacataccatccagtttgtgtattcacaggacaagacagtgctc
tgtggtgaacagatcactttccatgtggtaccaggtgaaccagttaaattaatgccagaa
gagcagccagccactcctactgtttcaaatgtccgtgctgtgactcatcgtaccttggtc
aaaagcttgtgtctaaaagtcatggatgaatataacaatccaactggagaggatatttgt
ggcaagttggtggttacgattagaagtgcaactgaagatgagagtgaggttcctcagttt
cagggaaaactcagcagtttggagtttgagctcaaccaaggatcttctgttatttctaac
ttggtgctggcagaaaactgtcctggtagggatagtactgaatatatgctgatttttgaa
ccgactatttcaaaacccgtcaagcggaatcctttacctccatacattttatcatttatg
ttttataatgattttaagaaacagcaacagatgacaactttgacgaaagagaaggatcaa
ctctccctatccattattgcatacaggagtttatttgacaccaccaatcaactaatcagt
gaaatgaagtgtcaggcacatgaagctacagcaaaagaagctcacctaagaaatgaactt
caaaagcagaagataaatatcgcagaagtttcaactatccaaggcattgatactgttttg
aagcagatgaaactcgaaagagacaggatattaaaactacccagaagaacatgttctctg
tctaattacaccagaaacagtgctgacgttttaggaaagattgcgcacttggcaatgata
gaggatgatgaggtggccagggtaatctcttggcatatggctagcgatatggactgcgtg
gttactttaaccaccgatgctgctcgccgtatcttcgatgaaagtcaggggcgccaacaa
gtactaccgctagattccatatacagaaaaaatcttccagatgctaaaaggcctttacct
cacatgcgaaatggaaaatgtcatttcaagcctgaggggaatccaatatttgtccgggaa
ctgcttattttttctgaaaatgtggagcagtgtcacacagtgtttggaatgcttcttgga
gatacaattattctagatgacttaaaggctgccaatcagtatagaaaagaggttgtgaaa
atcacccattgccctaccttgctgaccagagatggggacagaattcgaagcaatgggaag
tttggaggccttcaaaacaaagctccacaaattgataaacttcgaggactggtgtttgga
gctcctctaccaaaagcttatcatacactgaattctcaaattgatcttatccagcaatat
cgctctgctctgatcaagcttaataacgtcaaccaggaactggatctgcagctgaaatat
cttggttctccagaaatgaccctgaagcacaaagagcttaatgaacaagagaaccaactc
aagcaaatagagcaacagctaggtatgactccaacaagagcaacttctgacaacagtccc
aaagcattggcgttagatttatctgatggacaggctccaagcaaaaaaatgagaagagag
attgcgaagaaaacatatagtgccgaagagtgggtttcaatacctttgaaaaaatcacag
cagccaccttcaggatctggaatggacacaaatggaagtactttgtcacggaaaagaaag
gcttag
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integrated database retrieval system
