Chiloscyllium punctatum (brownbanded bambooshark): 140491221
Help
Entry
140491221 CDS
T11285
Symbol
smg6
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140491221 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140491221 (smg6)
03032 DNA replication proteins [BR:
cpun03032
]
140491221 (smg6)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140491221 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
140491221 (smg6)
DNA replication proteins [BR:
cpun03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
140491221 (smg6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
140491221
NCBI-ProteinID:
XP_072445303
LinkDB
All DBs
Position
19:95648052..96121519
Genome browser
AA seq
1496 aa
AA seq
DB search
MGPDNIPVIILKTRAPELAAPLAKLSQSSCNTGIYPTNVENYPGSDHSFSASSEPEISFG
RILVMSGRSKPTHWIYLTAHSASILDLPKDSKEPRSRRDNRRPDIQFYQPGVSRLRNNRQ
KSSQPETSGKEETNGKDPGANQEIQCQSVPRKSCSLAAEGHSNGASNQGGANRNGQLNRH
EEDDSKWAEQQIETSTNSNTVGKQLKKVKKPDRQIYQPGRRVHVLGKQSTNRPCSEELVK
KVEELRLEDDSNNVCVEENTEIGEGKDSWGNKEKTQSTIDVNISKREKGRRGGRKEXAAQ
GNNLAADAEDSRVVRSQARPEKPGGPSKRYSRSDKRRGRNRTCSTSSAGSNNSFDGPLCQ
HGAADGERKKTGMKERKTASERKEKVRPCKQISISSTDSLEDDYAEEIRNRTPVKSPEKR
KGFEKERLLSRNTEGSDPWNRESKTTHKIRIDNETSGRTITLKKNSEEKSKGRGKAGRPE
AKPNLSGSKPTENSEKREKAGEPRGKGRGILVLPANTDLSSTAPGSPDSPQVGPRLLFGR
NSRGRGRGGTSRRLWDPNNPDQKPALKSQSAQLHFLDTDDECSSSSQGETYSSYTHPTPA
AYYKFQNSDNPYGYSRAAVPGPQYPYGPYAMPYQISGNNNIYPAAYYPSYPATQFLSPFQ
AGQLNPEDMEQQVRTLQQQELGKLLRMADNQELQLSNLLSRDSISKEGLERMAQLRAEIL
LLYERCILTDIEYSDTQNVEQTMWKNAFYQVIEKFRQMLKEPSGENGDEIRGKLLSLLDE
GTNFFDSLLHKLQITYQFKLDDYMDGMAIRSKPLRKVVKYALISAQRCMICQGDISRYRE
QANDTTNYGKARSWYLKAQQIAPKNGRPYNQLAILAIYTRRKLDAVYYYMRSLAASNPIL
TARESLMSLFEETKRKAEQAELKRQQESELSPGLRGKGRKQTFRQVGEDTSRVEVWIHAT
HPPSSQGSESGREDGTSEQDEDLGNLSPSDLNKRFILNFLHAQGKLFTKIGMETFPLVAA
NVLKEFRALLQHSPSPIGNTRMLQLMAINMFAVHHSQLKDSGSENCRSVIQEHATALGLA
IFGLLVERCIEQLKETARARSTEEEDDDIKVSAFSFDLKELLPSVKVWSDWMLGHPDEWN
PPPKSLVLPKEIAIDVWAMLAEFCNIFTAVNQSEVPLYKDPDEDLTLLVLEEDKILSGFV
PLLAAPQDPCYVETAADKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSMAPIPD
SLGKEDGSQQGKQLEDQEEDVIIEEYEGQSSEPDGSEGEDDIKELRAKKQALTKRFAEQQ
RRQEKIQAVLEDQTFKRQIEIEITPVFLVPDTNGFIDHLPSLVRLLDCKLYIIVVPLIVI
NELDGLAKGQDTDYHGGNHAKLVQERAKKAIDFLEQKFESRDSCLRALTSRGNELESIAF
RSEDTTGQQGNNDDLILSCCLHYCKDKAKDLMPVNKDEPVRLRRDVVLLTDDRNMR
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgggccctgacaacattccagttataatactgaagactcgtgctccagaacttgctgct
cctctagccaagctctctcagtccagctgcaacactggcatctacccgacaaatgtggaa
aattacccaggctcagatcactccttcagtgcttccagcgaaccagagatttccttcggt
cgaattcttgtaatgagcggcaggagcaaacctactcactggatttatctaactgctcat
tctgcttccattctagaccttcccaaggatagcaaggagccaagatcccgaagagacaac
aggcgacctgatattcagttttaccagcctggtgtttccaggctgaggaacaacagacaa
aagtcatcacagccagaaacctccggaaaggaagagaccaatggcaaagatcctggtgcg
aatcaggaaattcagtgccagtctgtgccaaggaagagctgctccttggctgctgagggt
cacagcaatggtgcaagtaaccagggaggtgccaacaggaatgggcagctaaatagacac
gaggaggacgattcaaagtgggctgagcagcaaattgagacaagtacaaactctaatact
gttgggaagcaattgaagaaggtcaagaaaccagatcgtcagatttaccagccaggccga
cgtgtgcatgtgctgggcaagcagtcaaccaacagaccgtgcagtgaggagctggtgaag
aaagtagaagagttgaggctggaggacgacagtaacaatgtctgtgttgaggaaaacact
gagattggtgaaggtaaagacagttggggaaacaaagagaagactcagtcaactattgac
gtgaacattagcaaaagagaaaaggggagaagagggggaaggaaggaangtgcagctcag
gggaataacttggcagcagacgctgaagacagtcgagttgttcgatctcaggccagacca
gagaaacccggaggtccctcaaagcgctactccaggtctgacaagcgtcgggggcgtaac
cggacgtgcagtacaagctctgcagggagcaacaacagctttgatggacctttgtgccag
catggagctgctgatggagaaaggaagaaaactggaatgaaggaaaggaagactgcttct
gagaggaaagaaaaggtgcgaccttgcaaacagatttcaatctcgagcactgattcttta
gaagatgactatgctgaggaaatcaggaatcggaccccagtgaagagtcctgaaaaacgg
aaaggttttgagaaagagcggttgctcagcaggaacacagagggctcagatccctggaat
agggagagtaaaaccacgcacaaaattaggattgacaatgaaacaagtggcaggaccata
acgctgaagaaaaactctgaggaaaagagcaaagggagaggcaaagcaggaaggcctgag
gccaaacccaacctgtcaggcagcaagccaactgagaactctgagaaaagggagaaagct
ggggaaccgcgaggaaagggacgcgggatcttggtcctgcctgctaacaccgatctatca
tcaacagcaccgggctctccggattctccacaggtgggaccaaggcttctgtttgggcgg
aactcacggggtcgaggccgtggtgggacatcgcggagactgtgggatcccaataaccct
gatcagaaacctgccctgaagagccagagtgctcagctccacttcctggacaccgatgat
gaatgcagttcatcgtcccaaggagaaacctactcatcctacacacacccaacacctgca
gcgtactacaaattccagaactcagataatccgtatggttactccagagcagcggtgcca
ggccctcagtatccctatgggccttacgcaatgccataccagatcagtggcaataacaat
atctatcctgcagcatattacccgagttacccagctacccagtttctctcccctttccag
gctgggcagctgaacccagaagacatggagcagcaagtacggaccttgcagcaacaggaa
cttggcaagctgctgcggatggcagacaatcaggagctccaactgagcaacttgttatcc
agggacagcatcagtaaagaaggactggagagaatggcccagctcagggcagagattctg
ctgctgtatgagcgctgcatcctgactgacattgaatattcggacacccaaaatgtggaa
cagactatgtggaagaatgccttttatcaggttatcgagaagttccggcagatgctgaaa
gaaccttctggagagaatggtgatgaaatcagagggaagcttttgagtttactggatgag
gggaccaacttctttgacagcctcctgcacaagctgcagattacctatcagtttaaactg
gatgactacatggatgggatggccatccgcagcaagccgcttcgcaaagtggtgaagtat
gcactgatcagtgcccaacgatgtatgatctgtcaaggagacatttcccgctacagggaa
caagccaatgacaccacaaactacggcaaggctcgcagttggtacttgaaagcacagcag
attgcacccaaaaatggacggccgtacaaccagcttgctattctagccatctacacgagg
cggaagctggatgctgtctactattacatgcggagtcttgctgccagcaatccaattctt
acagctcgggagagtctgatgagtctcttcgaagaaaccaagaggaaggctgagcaggct
gagttaaagagacagcaagaatctgaactcagcccaggcctccgaggcaaaggcaggaag
cagacattccggcaggttggagaagacaccagccgggtggaagtttggatccatgccact
caccctccctcctctcagggaagtgaatcgggcagagaggatggaacatcagagcaggat
gaggatcttggaaatctctctcccagtgatctgaataaaagatttatcctgaatttcctc
catgcccaagggaagctgttcacaaagatagggatggaaacctttcctttagtggctgca
aatgttctgaaggagttccgagcactgcttcaacatagcccatcccccattggtaataca
cgcatgctgcagctcatggctataaacatgtttgctgtgcaccattcccagcttaaagat
tctggttcagagaactgccgatcagtgatacaggagcatgccacagcactgggactggcc
atattcggcttgctagtggaacgctgcattgaacagttaaaggaaactgctagagcccgc
tcaactgaggaggaagatgatgatatcaaagtgtccgctttcagctttgacctgaaagag
ctgcttcccagtgtgaaggtgtggtctgattggatgttaggccacccagatgagtggaac
ccgccacccaagtccctcgtcctgccaaaagaaattgccatcgatgtgtgggccatgctg
gcagagttctgcaacattttcacagctgtcaaccagtcagaggtaccgctatacaaggac
ccggatgaggacctcaccctgctggttctcgaggaggacaagatcctctcaggctttgtt
cctctgctggctgcccctcaggacccatgctacgtggagacagccgcagataaggtaata
gcggctgactgcaaaagggtcacagtgctaaagtacttcctggaagctctgtgcggccaa
gaagaacctctgttggcattcaagggtggaaagtatgtgtcaatggcacccatcccagac
agcctgggaaaggaagatggaagccagcagggaaaacaactggaggatcaggaagaagat
gtcatcattgaagaatacgagggacaaagctctgagcccgatggcagtgaaggggaagat
gatataaaggaattgagggcaaaaaagcaagcgctgactaaaagatttgccgagcagcag
cgcagacaggaaaaaatccaggcagtattagaagatcagacattcaagagacagatcgag
attgagataacacctgtctttctagtgccagacaccaatggatttattgatcatctcccc
agcctggtcagactgttggactgtaagctgtacatcatcgtggttccacttattgtgata
aatgagctggatggtctggctaaaggccaggacacagactaccacggtggaaaccatgcc
aaattggtgcaggagagagccaagaaagccattgacttcctggagcaaaagttcgaatcc
cgtgactcatgtctgcgggctcttaccagcagaggtaacgagctggagtcaattgcgttc
cggagtgaggatacaaccggacagcagggtaacaatgacgacttgattctctcatgctgc
cttcattattgtaaggacaaggctaaagacttgatgccggtgaacaaggatgagcccgtt
cgcctgcgccgtgatgttgtgttgctgacagatgaccggaatatgaggtaa
DBGET
integrated database retrieval system
