Cryptosporidium parvum: cgd7_690
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Entry
cgd7_690 CDS
T00168
Name
(RefSeq) small nuclear ribonucleoprotein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cpv
Cryptosporidium parvum
Pathway
cpv03018
RNA degradation
cpv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
cgd7_690
09123 Folding, sorting and degradation
03018 RNA degradation
cgd7_690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpv03019
]
cgd7_690
03041 Spliceosome [BR:
cpv03041
]
cgd7_690
Messenger RNA biogenesis [BR:
cpv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
cgd7_690
mRNA degradation factors
5'-3' decay
Lsm complex
cgd7_690
Spliceosome [BR:
cpv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
cgd7_690
Complex C
U2 snRNP components
cgd7_690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
YLDV-IL18BP-like
Hpr_kinase_N
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
3371771
NCBI-ProteinID:
XP_628259
ApiDB_CryptoDB:
cgd7_690
UniProt:
Q5CYX1
LinkDB
All DBs
Position
7:<159466..>159753
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AA seq
95 aa
AA seq
DB search
LLNFLEPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDT
QNSEKKLKKRRIEMLFLRGDLIILVKPAVKLGKST
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
ttattaaactttttagaaccactggatctcattagactaagcttagatgagcaagtgttt
gtaaaatgtagaggaaatagagaattaaaaggaactctttatgcttatgatccccacatg
aatatggttttgggtaatgttgaggaaacctactatgaagaggaatccaaatcagacact
cagaattctgagaagaagcttaaaaagagaaggatagagatgttatttttaagaggagat
ttaatcatcttggtcaagccagcagtaaagcttggaaaatctacctag
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