Coccidioides posadasii: 9692646
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Entry
9692646 CDS
T01332
Symbol
LIG4, D8B26_007620
Name
(RefSeq) DNA ligase (ATP)
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
9692646 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpw03400
]
9692646 (LIG4)
Enzymes [BR:
cpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
9692646 (LIG4)
DNA repair and recombination proteins [BR:
cpw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
9692646 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
DNA_ligase_A_C
LIG3_BRCT
RTT107_BRCT_5
Death_TNFRSF11B
Motif
Other DBs
NCBI-GeneID:
9692646
NCBI-ProteinID:
XP_003067175
UniProt:
C5PD69
LinkDB
All DBs
Position
4:complement(join(2390918..2390937,2391074..2391476,2391526..2391631,2391689..2391821,2391876..2392007,2392062..2394172,2394225..2394277))
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AA seq
985 aa
AA seq
DB search
MDRLNNVGRETERELDEKYPNRPRNKQSTLPFHDLFLTLFNPLNGNKKRPTGPAAARKKL
GPHGGQQTLSPQELRRDIIQRFISRWRKEVGNDIYPAFRLIIPEKDRDRAMYGLKEKTIG
KLLVKIMKIDKNSEDGFNLLNWKLPGQSMASRMAGDFAGRCYEVISKRPIRTDVGNMTIQ
EVNDKLDVLAATSKEDEQIPVLEEFYRNMNPEELMWLIRIILRQTKVGATERTFFEIWHP
DAESLFSISSSLRRVCWELYDPNVRLEADEARVTLMQCFQPQLAQFQMHSFPKMIERMRL
SPDDPTFWIEEKLDGERIQLHMMSDDSIPGGKRFGFWSRKAKDYTYLYGNGFYDENGALT
RHLKDAFADGVDNIILDGEMITWDPEQDAPLPFGTLKTAALSEQRNPFSATGQRPLFRIF
DILYLNDKALTRYTLRDRRRALEASIKPVHRRLEVHPYEIGNSAADIEPQLRKVVAEASE
GLVLKNPSSPYRLNDRHDDWMKVKPEYMTEFGESLDCVVIGGYYGSGKRGGGLASFLCGL
RVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTDGKWKDWNPKKPPTEFIELAGG
DAQYERPDVWIRPDESVVLCVKAASVTPSDQFRLGLTVRFPRFKRLRMDKDWKSALSIQE
FMDLKANAEREQKEKEFKIDNSRRKRAKRAVKKPLTIAGYDESKRAGFTGPSGHVFEGMN
FFVITDSVELEKKSKLELEQLIKANGGKIYQTHTAAPNTLCIAERRTVKVASVQKVAKES
IIRPSWLFDCIKQNEIDKGLPDLLIPFEPRHMYFTVKSQEEEIARHVDEYSDSYVRDITP
NELSKLLVSMPLIPNLPPPHISKTETQIQERESTFQELRGWLFKNQVLHFVKPRSDSMLS
LPLRLASNLARFAGASVANELEDKSITHVVIDTDSQPADVSALRSAISKRVAAGRRIPHL
VTIAWIQDSWKAESLLDEERFAPTA
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggaccgattgaacaacgttgggagagagaccgagagggagctcgatgagaaatatccc
aaccgtccccgcaataaacagtcgacattacctttccatgaccttttccttacgcttttc
aatcccctaaatggaaacaagaagagaccaacaggacctgccgccgctcgcaagaagttg
ggaccacatggaggacaacagaccctttccccgcaggaattacggcgagatattattcaa
cgtttcatttcacgatggagaaaggaagtggggaatgatatctatcctgcgtttcgattg
atcatacctgagaaagatcgagatcgtgcgatgtatggcttgaaagagaagacaattgga
aaactgctggttaaaattatgaaaattgataaaaactccgaagatggatttaaccttttg
aactggaagcttccaggccaaagcatggcgagtcgaatggctggcgattttgctggtcgc
tgctacgaagtgatatcaaagcgacctataagaacagatgttggcaacatgaccatccag
gaggtcaatgacaaactggatgttctagctgccaccagtaaggaagatgagcagatacct
gttcttgaagagttctacagaaacatgaaccctgaagaactaatgtggctcataagaatc
attttgcgtcaaacgaaagttggagccactgagcggacgttcttcgagatatggcatcca
gatgcagagagcctgtttagcatatccagcagccttcggcgcgtttgttgggaattatat
gacccgaatgtccgcctggaggccgatgaagcacgggtgacgctcatgcaatgctttcaa
cctcaattggcgcagtttcaaatgcattcatttccaaagatgatcgagaggatgcggctc
tcccctgacgatccaacgttctggatcgaagagaagctagatggtgagcgaatccagctt
catatgatgtccgacgactccattcctggaggtaaaagatttggattctggtcacgtaaa
gcaaaggattatacatatttgtatgggaacggattctacgatgagaatggagcattgacg
cgacatcttaaagatgcttttgcagatggtgttgataacatcattctcgatggagaaatg
attacctgggacccagaacaagacgcaccattgccctttggcacgctcaaaacagcagct
ttatcagagcagaggaacccattctcggctactggccaaaggcccttatttcggattttc
gatatcttgtacctcaatgataaagccttaaccagatacacattacgggatagaagacga
gcccttgaagccagtatcaaaccagtccatcgtcgtttggaagttcatccctacgaaatc
ggtaattctgctgcagatattgagcctcagctccggaaggtggtggcagaggcatctgaa
gggcttgttcttaagaatccaagttcaccttatcgtctgaatgaccgccacgatgattgg
atgaaagtgaaacctgaatatatgacggagtttggtgaatcccttgattgcgttgtgatc
ggtggatactatggctcaggtaaaaggggcggtggattagcaagttttctgtgtggactg
agggttgacgaagcccaagttcgacagggggctagcccgatgaaatgctactcatttctt
aaagttggaggaggattcacggctccagactatgcgaatattcgccaccataccgacggc
aaatggaaagattggaatcccaagaagccgccaactgagtttattgaattggctggtggt
gatgcacagtacgaacgccctgacgtatggattcggcccgatgagtctgttgttctgtgt
gtcaaagcagcctctgtgactcctagtgaccagtttcgattggggttgacagttcgcttt
ccgcgattcaagcggttacgaatggataaggattggaaaagcgccctgtccattcaagaa
ttcatggacttaaaggcgaatgcagaaagagagcagaaagaaaaggaattcaagatcgat
aactcccgaagaaaacgggcgaagagggctgtcaagaaaccccttacaattgctggatac
gatgaaagcaaaagggccggttttacaggtccatcagggcatgtttttgaaggaatgaat
tttttcgttattacggattcagttgagctggagaaaaagtccaaacttgagctggaacaa
ttgatcaaagcaaatggcgggaaaatatatcaaacccatacagcggcacctaatactctt
tgtattgcagagagaagaactgttaaggttgcatctgtgcaaaaagtagcaaaagaaagt
atcattcgtccgtcttggctgtttgactgcattaagcagaatgaaattgacaaagggcta
ccggatttgttgatccccttcgaaccgagacatatgtattttacggtgaaaagccaagaa
gaagagatagcccgacatgtggacgaatattcagatagctacgtgcgagatattacccca
aatgagctaagcaagcttcttgtttcgatgcccctaatccctaatctcccaccaccccac
atttcaaaaacggaaacccagatacaagaacgagaaagcaccttccaggagctgcgaggc
tggctattcaaaaaccaagtgctacattttgtcaaacctcgatcggattccatgctgtcg
ctccctctacgtcttgcgtctaatcttgctcgatttgcgggtgcttcggtggcaaatgaa
ctggaggacaaaagcatcacccatgtcgtcattgacacggacagtcaaccggctgatgtt
tctgctttgcgctctgcgatatcgaagcgtgtagctgctgggagaagaattccgcatctt
gtgactattgcctggatccaagacagctggaaggcagaatcattgctagatgaagagcgg
ttcgctccgaccgcctag
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