KEGG   Coccidioides posadasii: 9692716
Entry
9692716           CDS       T01332                                 
Symbol
LSM3, D8B26_007701
Name
(RefSeq) U4/U6-U5 snRNP complex subunit lsm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
cpw  Coccidioides posadasii
Pathway
cpw03018  RNA degradation
cpw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9692716 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9692716 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpw03019]
    9692716 (LSM3)
   03041 Spliceosome [BR:cpw03041]
    9692716 (LSM3)
Messenger RNA biogenesis [BR:cpw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9692716 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     9692716 (LSM3)
Spliceosome [BR:cpw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    9692716 (LSM3)
 Complex C
  U2 snRNP components
    9692716 (LSM3)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 9692716
NCBI-ProteinID: XP_003067245
UniProt: E9D2R2 C5PDD9
LinkDB
Position
4:join(2621069..2621194,2621260..2621352,2621407..2621443,2621503..2621543)
AA seq 98 aa
MADEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETVY
VVEEDENEEEIIKTIKRQEDMLFVRGDSVVLISPQSSP
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcggacgaagccgatggcggcgcgccgtccttttccgaacctcttgacctggtccgc
ctatcgctcgatgaaatcgtcttcgtgaagctgagaggagatcgggagctcaaagggcgc
ctacacgcgtacgacagccattgcaaccttgttctcggagaagtcgaggagacagtctat
gtggtggaggaagatgaaaacgaggaagagatcatcaagacgataaaacgacaggaagac
atgctattcgttcgaggagactccgtcgtcctgatctcgccgcaatcctcgccgtga

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