Coccidioides posadasii: 9695248
Help
Entry
9695248 CDS
T01332
Symbol
D8B26_006303
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
9695248 (D8B26_006303)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpw03400
]
9695248 (D8B26_006303)
Enzymes [BR:
cpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
9695248 (D8B26_006303)
DNA repair and recombination proteins [BR:
cpw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
9695248 (D8B26_006303)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
9695248
NCBI-ProteinID:
XP_003069753
UniProt:
C5P4G8
LinkDB
All DBs
Position
3:complement(join(4250678..4252790,4252839..4253986))
Genome browser
AA seq
1086 aa
AA seq
DB search
MGFKFSYVCDLLSSLDNNRIAKTTSEARKKDPDVSTVSQWFDNYERKIHSGDTDRLALLS
CIFPEKRPERVFRLREPSLTKVVGRCLLLGASRKQELDRWREKGWGDLGQCVEYVMQQAE
NCLEGQDEVTVEEIDLALAKVASRCRFSGPTARYQYSAVGVDETLSPIFRRLSSRDAKWF
TRLILKDFNPVTIPTQLILRHFHFLLPKLLFFQNSLEGALMFLAKEPINSFPPRPEAHYA
DLLSKLALPHLRPEVGFKIGRADFLKARSLKHCCKMADRRIMGVEKKYDGEYCQIHIDLS
KADSMRIFSKSGKDSTRDRRGVHNTLRKSLRIGKDDCRFSIRCIVECEILVWSDRDSSIL
PFHKLRKHIARSGSFIGIDNDSQPDASEHLYLAFFDVLMVDDDVCLSKPYRQRRQILQDI
VDPIEGYSELAQQQTINFSHPDSYQLLRDAVAMAAALRWEGLVLKGSDEPYFPLFEENAD
VNFGRWIKLKKEYIPGLGDSVDFALIGARYDAQDALQCPNVKNLSWTSFFVGCQEGDNQN
LSVKARNYRVIDVLGRHNISPKLMQTLNQLGQFQACEQGSESCPFSIRIDQPQIPEMEVF
FRIPFVVELVGSGFERPHCARYFTLRFPRVLKIHSDRGLDDAVSFEELQQLAEAARAVPV
EQLSQEIAIWSAKLDAKDGKLGYIVDDSEMFSASSDSPDRMSSETWSFATMSLNESFIDN
RNHIDIPSYKLVSAPVPPVQRHDPNFPAIRTMNSHSPKIEIHKTSTNSLPSINILPDDTQ
STSAVEDSFRSTNASSGFLTDLKASSRKTNRHKSPGENIPSDPVTIPTSPLSPNELTNLE
NKPRVLKGKISEQPTKTQSWNTFAQSHCVLSKKARQGSPHAAFQEDSIPVSVEGNGVLHK
APMFLSPGISKKARDLVDVCLKKLNRSSTLSILHFFDEISSMKNLRISSKSASLPSRYGI
VIVDPKNGDASDVASDIQTIGNGLAKCRRQGRLLGSGKILFVHWKILHLAVSRRTRSQRN
WDSYGKAIFAGCLKWGYGVPTRQRHMHNASLESRQQQQSKRPQAETDVVVSMDWKEILPL
MWVDHG
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcaagttttcgtatgtctgtgatctcctatcaagcctggataacaatcggatt
gcgaagacaacctcagaagcaagaaagaaagatccggatgtctctacggtctcacagtgg
tttgacaactacgagaggaaaatacactccggggataccgatcgtcttgctcttctctct
tgtatctttccggaaaagcgcccggaacgtgtttttcggcttcgagagccatcgttgaca
aaggtcgttggacgatgtctccttcttggtgcctcgagaaaacaggaactagatcggtgg
agggagaagggctggggagacctggggcaatgcgttgagtacgttatgcagcaggccgaa
aattgcctggaaggtcaagatgaagtcaccgttgaagaaatcgatcttgccttggcaaaa
gttgcatctagatgccggttctccggaccaacagcccgttatcagtactctgctgtgggt
gtggacgaaactctgtcccctatttttcgcaggttgtcgagccgagatgcgaaatggttt
acgagactgattctcaaggatttcaatcccgtcaccatccctacccaattgattcttcgg
catttccattttctattgccaaaactactctttttccagaactcgcttgaaggcgctttg
atgtttctagccaaagagcccataaattcttttccgccgcgtccagaggctcactacgct
gatcttctgtcaaagcttgcgctaccccatcttagacctgaggttggatttaagatcggc
agggctgatttcttgaaagcaaggagtctcaagcattgctgtaaaatggcggataggcgg
ataatgggcgtcgagaagaaatatgatggagaatattgccaaatacacattgatctctca
aaggcagacagtatgcggatattttcaaaaagtgggaaagattcaaccagggacaggcga
ggcgtccataatacgttgagaaaatcccttcgaatcgggaaagatgattgtcgtttttct
atcagatgcattgtagaatgtgaaattctagtgtggagcgatcgtgactcctcgattctt
ccgtttcataaacttcggaagcatatcgctcggtctggttcgtttattggaatcgacaat
gactcccaacccgacgcttctgaacacttgtatctggccttttttgatgtgttaatggtt
gatgacgatgtgtgtttgtctaagccctaccgtcaacgtcgccagattctccaagatatc
gttgacccaattgaaggatactcagagttagcccaacaacaaacgattaatttttcacat
cctgacagctaccagcttttaagggatgcagtcgccatggctgcagccctaagatgggaa
ggtctcgttctcaaaggaagtgatgagccatatttcccactattcgaagaaaatgcagat
gtgaactttggacgttggattaagctcaagaaagaatacattccgggtcttggtgactct
gtcgactttgcacttattggcgcgagatatgatgcccaggatgctctccaatgtccgaat
gtcaagaacctttcctggacatcattcttcgttggatgtcaggaaggagataaccaaaac
ttgagcgtgaaagcgaggaactatcgagtcatcgacgtgcttggtcgccataacattagc
ccaaagctcatgcagactcttaaccagctcggccagttccaggcctgcgaacagggctcg
gaatcatgtccattctctatcagaatagaccaacctcaaatcccagagatggaggtcttc
tttcggattccattcgtggtagaactggttggaagtggctttgaacggcctcattgcgcg
aggtactttacgctgagattccctcgggtactgaaaatccactcggaccgtggactggat
gatgctgtttctttcgaggagcttcaacagcttgctgaggctgctcgtgccgtgcctgtg
gagcagctatcgcaagaaatcgctatttggagcgcgaagctagatgcaaaggacggcaag
ctgggatacatcgtggatgattctgaaatgttctctgcatcttccgattcacctgataga
atgtcttctgagacttggagctttgccacgatgagcctaaatgaaagctttatcgataat
agaaatcatatcgatatcccatcatacaagttggtttcagctccggtacctccagttcaa
cgacatgacccgaactttccagcaattcggacaatgaattctcactctccaaaaatagag
atacataaaacatctacaaattctttaccctcgattaatatcttgcctgacgatacacaa
tccacatctgccgtggaagattcttttcgttctacaaacgcctcttctgggtttttaacc
gacctgaaagcctcttcaagaaagacaaatagacacaaaagcccgggagaaaatatacct
agcgatccagttacaatcccaacctcgccattgtctccgaacgaacttacaaatttggaa
aataaacctcgagttttaaagggaaaaatttcggagcagccaacaaaaactcagtcttgg
aacacattcgctcagtctcactgtgttttatcgaagaaagctagacaaggaagtccgcat
gctgcattccaagaagacagcatcccggtaagtgtcgaaggtaatggcgtcttacataaa
gcccctatgttcctcagccctggcatttcgaaaaaggctcgtgacttggtagacgtgtgt
ttgaagaaattaaatcggtcgtcaactttgtcaattttgcactttttcgatgagatatcc
agcatgaaaaatcttcgaattagctcaaaatctgcctcacttccgtcccgctacggcatt
gtgattgtcgaccccaagaatggtgatgcaagtgacgtcgcctcggacatccagaccatt
gggaatgggcttgctaagtgccgacgacaggggcgcttattgggttcgggaaagatactt
tttgtgcactggaaaatactgcatttggctgtaagccgccgcaccaggtcccaaaggaac
tgggactcatacggcaaagcaatatttgctggctgtctcaaatggggttatggtgtgcca
actcggcaacggcatatgcacaatgcctctctagagagtcggcagcagcagcagtcaaag
cgacctcaagcggaaactgatgttgtcgtgagcatggattggaaagaaatactgccttta
atgtgggtggaccatggttag
DBGET
integrated database retrieval system
