Curtobacterium flaccumfaciens: GBG65_11815
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Entry
GBG65_11815 CDS
T06246
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cqf
Curtobacterium flaccumfaciens
Pathway
cqf03030
DNA replication
cqf03410
Base excision repair
cqf03420
Nucleotide excision repair
cqf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBG65_11815 (ligA)
03410 Base excision repair
GBG65_11815 (ligA)
03420 Nucleotide excision repair
GBG65_11815 (ligA)
03430 Mismatch repair
GBG65_11815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cqf03032
]
GBG65_11815 (ligA)
03400 DNA repair and recombination proteins [BR:
cqf03400
]
GBG65_11815 (ligA)
Enzymes [BR:
cqf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GBG65_11815 (ligA)
DNA replication proteins [BR:
cqf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GBG65_11815 (ligA)
DNA repair and recombination proteins [BR:
cqf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GBG65_11815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GBG65_11815 (ligA)
MMR (mismatch excision repair)
DNA ligase
GBG65_11815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GBG65_11815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QHN63114
LinkDB
All DBs
Position
2383622..2385952
Genome browser
AA seq
776 aa
AA seq
DB search
MSETDATFETIDPDGLDAAQAAREVDRLRARVTELRHDYYEGNASPLSDADYDALVHRLD
AIERRFPELLTPDSPTQTVGGQAQTTQFAPVEHAERMLSLDNVFSPDELTEWALKVQRDA
GAERVRFLTELKIDGLAINLRYEHGRLVSAATRGDGVVGEDVTGNVRTMGTIPDRLSGTG
HPPLVEVRGEIFFPVAEFDELNANQREAGERVFANPRNAAAGSLRQKEEGKSEAKRALMV
DRLRRLRMLVHGIGAWPVRELEQGTDVRSQSEVYELLQTWGLPTSSHYRVFDTIDEVNGF
VRTTGERRSSVEHQIDGVVVKVDDLALHEELGSTSRAPRWAIAYKYPPEEVHTTLTDIVV
SVGRTGRATPFAVMAPAEVAGSVVRQATLHNQQVVKAKGVLIGDTVVLRKAGDVIPEVLG
PVVELRDGSEREFVMPTNCPECGTELAPAKEGDIDLRCPNAKSCPAQVRGRVEHIASRGS
LDIEGLGEVAAAALTQPLRPETPPLVTEAGLFDLTMQDIVPIEVIVRDAETGMEKVDDDG
TPKRVTPFSRARKKTDPPFDPEARGADYTGEPSRYPSKNAFEMLANIDAAKTKPLWRILV
GLSIRHVGPVAARALANHFGSLDAIRSASREDLAAVDGVGGIIADALLAWFDVDWHREII
DRWTTAGVQFTTPGHPGPGSADVEGGVLSGVTVVATGSLEGYTREGAQEAIITAGGKAAS
SVSKKTDFVAAGPGAGSKLTKAEQLGVRIIDAEQFHLLVTEGPAALAEPEAPTTED
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaccgacgcgacgttcgagaccatcgaccccgacgggctcgacgccgcccag
gccgcgcgcgaggtcgaccggttgcgtgcccgcgtcaccgagctgcgccacgactactac
gagggcaacgcctcgcccctgtcggacgccgactacgacgccctggtgcaccgtctcgac
gcgatcgaacggcggttcccggaactcctgacgcccgacagcccgacgcagaccgtgggc
gggcaggcgcagacgacgcagttcgcgccggtcgagcacgccgagcgcatgctctcgctc
gacaacgtgttcagccccgacgagctcaccgagtgggccctcaaggtgcagcgggacgcc
ggtgccgagcgggtgcggttcctgaccgagctgaagatcgacggcctggccatcaacctg
cggtacgagcacggtcggctcgtctcggccgccacccgcggtgacggcgtggtcggcgag
gacgtcaccggcaacgtccgcacgatgggcacgatcccggaccgcctgtcgggcaccggc
cacccgcccctggtcgaggtccggggcgagatcttcttcccggtcgcggagttcgacgag
ctcaacgccaaccagcgcgaggcgggggagcgcgtgttcgccaacccgcgcaacgccgcc
gccgggtccctccgccagaaggaagagggcaagtccgaggcgaagcgggcactgatggtc
gaccggctgcggcgtctgcggatgctcgtgcacggcatcggcgcgtggcccgtccgtgaa
ctcgagcagggtaccgacgtccgcagccagtccgaggtgtacgagctgctgcagacctgg
ggcctcccgacgagcagccactaccgggtgttcgacaccatcgacgaggtcaacggcttc
gtccggaccacgggggagcgccgttcgtcggtcgagcaccagatcgacggcgtcgtcgtg
aaggtcgacgacctcgccctgcacgaggaactcgggtcgacgtcgcgggcgccgcggtgg
gcgatcgcgtacaagtacccgccggaagaagtgcacacgacgctcaccgacatcgtggtc
agcgtcggccgcaccggtcgtgccaccccgttcgcggtgatggccccggccgaggtcgcc
gggtccgtcgtccgccaggccacgctgcacaaccagcaggtcgtcaaggcgaagggcgtg
ctgatcggcgacacggtggtgctgcggaaggccggcgacgtcatccccgaggtgctcggc
ccggtggtcgagctccgtgacggctccgagcgcgagttcgtgatgccgacgaactgcccg
gagtgcggcaccgagctcgcccccgcgaaggaaggcgacatcgacctgcgctgcccgaac
gcgaagagctgcccggcgcaggtgcgcggtcgggtcgagcacatcgcctcgcgcgggtcg
ctcgacatcgaggggctcggcgaggtcgcggccgcggcgctcacgcagccgctccgcccg
gagaccccgccgctcgtcaccgaggccggactgttcgacctgacgatgcaggacatcgtc
ccgatcgaggtcatcgtccgcgacgccgagaccggcatggagaaggtcgacgacgacggc
accccgaagcgcgtcacaccgttcagccgggcgcgcaagaagaccgacccgccgttcgac
cccgaggcacgcggcgccgactacaccggtgagccgagccgctacccgtcgaagaacgcg
ttcgagatgctcgcgaacatcgacgccgcgaagacgaagcccctgtggcggatcctggtc
ggcctgagcatccggcacgtcggacccgtcgccgcccgggccctggcgaaccacttcggg
tccctcgacgcgatccggtcggcatcgcgcgaggacctcgccgccgtcgacggcgtgggc
gggatcatcgccgacgccctgctcgcctggttcgacgtcgactggcaccgcgagatcatc
gaccgctggaccacggccggcgtgcagttcaccaccccgggccaccccggcccgggcagc
gccgacgtcgagggcggcgtgctgagcggcgtcaccgtcgtcgcgaccgggtcgctcgag
ggctacacgcgcgaaggtgcacaggaggcgatcatcaccgccggtggcaaggctgcctcg
agcgtgagcaagaagaccgacttcgtggcggccggtccgggtgccggttcgaagctcacg
aaggccgagcagctgggcgtccggatcatcgacgccgagcagttccacctgctcgtgacc
gaggggcccgcggcgctcgccgaaccggaagcgccgacgaccgaggactga
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