KEGG   Chenopodium quinoa (quinoa): 110719510
Entry
110719510         CDS       T05764                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110719510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cqi03021]
    110719510
Enzymes [BR:cqi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110719510
Transcription machinery [BR:cqi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110719510
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 110719510
NCBI-ProteinID: XP_021754155
LinkDB
Position
Unknown
AA seq 1455 aa
MLSSMDDDVSIVNQVPVGILSGVHFNVLTENYAENISMLTIETPAGVTDPKLGFPNPTSQ
CATCGARSNKQCEGHFGVIHFPYTIIHPYFTAEVVQILNKICPGCKSLRRERRAKGAKTG
AKHDSARVCNPCKYCAVGRPSIRFRVSTNDLFRKTAITVELTERPQNKYQLENFWDFIPK
DVQVEESVNNNNNKRVLSPAQVYHLLKDVDPSFIKEFVSRKDALFLNCFAVTPNCHRVTE
LIHPFSTGQKLIFDDRTRAFRKLVDFRGAANELASRVLDCLKLSKLRLEKSNNDSDNVDV
LNTSASKWMKEVVLTKRSDHIIRSVVTGDPYLKLCEIGIPCYIAERLQISDHLNSLNWEK
LTASCNLRLLEKGEVYVRRKGELVSVREMEDFQFGDLIYRPLNDGDIMLINRPPSVHQHS
MLALHVKILPINSVVSINPLCCSPLQGDFDGDCLHGYVPQSMEARVELRELVGLDKQLRN
EQNGRNLLSLAHDSMTAAYLLTAEDVVLSKPQVQNLEMLCPLKLLSPPANSDFWTGKQIF
SMLLPPEFDYASPSNGVQITKGELISSPTGSSWFRGDADGNFFESLINHRGGKFLDYLDA
AQSVFCEYLSSRGFSVSLLDLYLCSDGHLRKNLVDEISCGLQEAEKNCHVTQLLVKSSIK
YLLGDEEENQIAMSLEADKLCCEKQKSAGLSRASASAFKYVYQDIQNIAYQYAANDNALL
AMMKSGSKGNLSKLVQQSMCLGLQHSLVPLTFRLPHKLSCSAWNELKERNSNFEEYFECN
KNFIPTAVVEGSFVTGLNPLECFIHSVTCRDSTFSDHASVPGTLMRKLSFFMRDIQLAYD
GTVRNAYGNQLVQFSYAVEKGESSSQGNDGSIGESMNACEAVGGHAVGALAASAFSEAAY
GALDQPITVLEPSPLLNFKKVMESGSRKAKGSRTVSLFLSQKLRRLRYGSEYGVLEIKNH
LEKLLFSDIVSTVMILYSPENHNRMQICPWVCHFHVSKDILKKMRLKVFSIIDALKRKCE
ATASLANVQLVSKNGCRSDAGNDTTIVCITATITESPRKSHADLYSVREVVIPSLLGSVV
KGFAEVDKVEILWHDHPVESRIQKKSPGGELYLSVSLSANCKSKNMWSRLMNNCLPIMNL
IDWTRSYPDDLSEINSAFGIDVAWRCFLENLRSAATDTGKTILPEHLILLADCLSVTGEF
VGLSPKGVARQKALVSVSSPFMLACFNNAGPNFIKAAKKGTADGLLGSIDALAWGKRPCL
GTGAQFDFMYSGKGHEIQKPVDIYNLLASHTSSHDSETKINLPPNDQTIVSEKLGAHHVN
KWSNAKVFNAAIPKKFLQKHFSVDDIWKLGRIWKRILYKYEIDDKLSDIDKAMLLMALKF
HPHREEKIGSGAVDIKVGHHAEYKDSRCFVLERDDGTFEDFSYKKCVFGALEIIAPSRAK
LYQTRWAKNGTTQKV
NT seq 4368 nt   +upstreamnt  +downstreamnt
atgctgagttccatggacgatgatgtcagtattgtgaatcaagtgcctgttgggattcta
tcaggagtccactttaatgtgctgactgaaaactatgcagagaatatatctatgttaact
attgaaactcctgccggagtgactgatccaaagttgggatttccaaatccaacttcccag
tgtgccacctgtggtgcaagaagcaataaacagtgcgaaggtcattttggtgttatccat
tttccatacacaattatccacccatattttacggctgaagttgtacaaattttgaacaaa
atctgcccaggatgtaaatctcttcgaagagaaagacgcgctaagggtgcaaaaacaggg
gctaagcatgattcggcaagggtttgtaatccttgtaaatattgtgcagtaggaagacca
tctatcagatttagagtttccaccaatgacttgtttaggaagacggcaattaccgtagaa
cttactgagagaccacaaaacaaataccagcttgaaaatttttgggattttattcctaaa
gatgttcaagtggaagaaagtgtgaacaataacaataataaaagagtgttgtcacctgca
caggtctaccatttactaaaagatgttgacccaagcttcataaaagaattcgtttcaaga
aaagatgcgcttttccttaattgctttgcagtgacgcccaattgtcatcgtgtcactgaa
cttattcatccattttctactgggcagaaattaatttttgatgaccgaactagggctttc
aggaaactggttgatttcaggggtgctgccaatgagttggcgtctcgtgtcctggattgc
ttgaaactttcaaagttacgccttgaaaagtcaaacaatgattctgataatgtagatgtg
ttaaacacatcagcttctaaatggatgaaggaagtagttcttacaaagagaagtgatcac
ataattcgctctgttgtcactggtgatccttatttgaaactctgtgagattggcatccct
tgttatatcgcagaaaggctgcaaatatcggatcatttgaattctttgaactgggagaag
ttgactgccagctgcaatttgaggcttcttgagaagggagaggtctatgttcgcagaaaa
ggtgaattggtttctgttcgagaaatggaggacttccaatttggagaccttatatatagg
cctttgaatgatggtgatattatgctaataaataggcccccttcagttcatcaacattca
atgcttgctttgcatgttaaaattctcccgataaattctgttgtctctataaatcctttg
tgctgttctcctttgcaaggagatttcgatggtgattgcctgcatggctatgtccctcag
tcaatggaagctagagtggagttaagggagctcgtgggccttgacaaacagttaagaaat
gaacagaatggaagaaatttgctctcactggcacatgatagcatgactgctgcgtatttg
ctcacggctgaggatgttgttctgtccaaacctcaagtgcagaatctggagatgctttgt
cccctaaaattgctttcacctcctgcaaattctgatttttggactgggaagcaaatattc
agcatgctattgccacctgaatttgattatgcatctccttcaaatggtgttcaaattact
aaaggagagttaatctcatctcctactggatcatcttggtttcgtggggatgcagatgga
aactttttcgaaagtcttatcaatcatcgtggtgggaaatttctggactatcttgatgca
gctcaaagtgttttttgtgaatatttgtcatcaaggggcttcagtgtctctctactggac
ctttatctgtgttctgatggacacctgcgtaagaatttggttgatgaaatctcttgtggt
cttcaggaagcagaaaagaattgtcatgtgacacagttgttggttaaatcttccataaaa
taccttcttggtgatgaagaagaaaaccaaattgctatgtcacttgaggctgataaacta
tgctgtgaaaaacagaagtctgctggtctaagtcgagcttctgccagtgccttcaaatat
gtctaccaagatattcagaatatagcttatcaatatgctgctaatgacaatgctttgttg
gccatgatgaaatctggaagcaaagggaatctgtcaaaattagttcagcagagtatgtgt
cttggtttacaacattcacttgtaccattgactttcaggctccctcacaagctttcgtgt
tctgcttggaatgagctgaaagaaagaaattcaaactttgaagaatattttgaatgcaac
aaaaatttcattcctactgctgtggtggaaggttcatttgtcacaggcttgaaccctctt
gaatgctttattcattctgtaacatgtcgagatagtacatttagtgatcatgctagtgtc
cctggtaccttaatgcgaaagctttcatttttcatgcgtgatatacaattggcctatgat
ggcaccgtgagaaatgcatatggaaatcaacttgttcaattttcttatgctgttgaaaaa
ggtgagtcttcctcacaaggaaatgatgggtcaattggtgagagcatgaatgcatgtgaa
gctgttggcggccatgctgttggtgcactggcagcttctgccttttctgaagctgcatat
ggtgcactagaccaacccatcactgttctggaaccttctcctttgttaaactttaagaaa
gtaatggagagtggttccagaaaagccaaaggaagcaggactgtttcactttttctctca
caaaagctcagaaggttgcgttacggttctgaatatggggtcttagaaattaaaaatcat
cttgaaaaactcttgttttcggatattgtctcaacagttatgatactctattctccagaa
aaccataatcgaatgcaaatttgcccttgggtttgtcatttccatgtgagcaaggatatt
ctgaagaaaatgcggctgaaagttttttcaattattgatgccctcaagaggaaatgtgaa
gcaactgcctcccttgctaatgtacaactagtgagcaagaatggttgtcgttctgatgct
gggaatgatactaccattgtatgcattactgccaccataactgaaagtccaaggaaatca
catgcagatttatattcagttcgagaggtggtaataccaagtcttctgggatctgtagta
aaaggatttgctgaggttgataaggtggagattttatggcatgatcatccggtggaatca
aggattcagaaaaagtcacctggtggtgaactatatctaagtgtctctctgtcagcaaat
tgcaaaagcaaaaatatgtggagtagactaatgaacaattgtcttccaatcatgaatttg
atagattggacacgcagttatcctgatgacctgagtgagataaattcagcttttggaatt
gatgttgcctggcgatgcttccttgagaatttgaggagtgctgctaccgatacaggcaaa
actattcttccagagcacttaattctactggcagattgtctgtctgtgacaggagaattt
gtagggttgagtccaaaaggggttgctcggcagaaagctcttgtatctgtttcgtcacca
tttatgttggcatgctttaataatgctggacctaacttcataaaggctgctaagaagggg
actgctgatgggctactaggaagcatagatgctttggcttgggggaagaggccatgtctg
ggaactggtgcacagtttgattttatgtattctggcaaggggcatgaaatccagaagcct
gtggatatctataacctgctggcaagccacacaagttctcatgatagtgaaactaaaatc
aatttgccccctaatgatcagacgattgtatctgaaaaacttggtgctcaccatgttaat
aaatggtcaaatgcaaaagttttcaatgcggcgattccaaagaaattcttacagaagcat
ttctctgtggatgatatttggaagcttggtcggatatggaagaggatattgtacaagtat
gaaatcgatgataagttgagtgacattgacaaggcaatgttgttgatggctttaaaattc
cacccacaccgagaggagaagattgggagtggagctgtagatattaaggttggtcatcat
gctgagtataaagacagccgttgcttcgttttggagagggatgatggaacttttgaagat
ttctcatacaaaaagtgcgtttttggtgcgctggagattattgctcctagtagagcaaaa
ctctatcagaccagatgggccaaaaatggcaccacacagaaggtctga

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