Crassaminicella indica: KVH43_01830
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Entry
KVH43_01830 CDS
T08466
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cras
Crassaminicella indica
Pathway
cras03030
DNA replication
cras03410
Base excision repair
cras03420
Nucleotide excision repair
cras03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cras00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KVH43_01830 (ligA)
03410 Base excision repair
KVH43_01830 (ligA)
03420 Nucleotide excision repair
KVH43_01830 (ligA)
03430 Mismatch repair
KVH43_01830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cras03032
]
KVH43_01830 (ligA)
03400 DNA repair and recombination proteins [BR:
cras03400
]
KVH43_01830 (ligA)
Enzymes [BR:
cras01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KVH43_01830 (ligA)
DNA replication proteins [BR:
cras03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KVH43_01830 (ligA)
DNA repair and recombination proteins [BR:
cras03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KVH43_01830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KVH43_01830 (ligA)
MMR (mismatch excision repair)
DNA ligase
KVH43_01830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KVH43_01830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
RNA_ligase
HHH_3
RNA_lig_T4_1
PTSIIA_gutA
Sec15_C
Metal_hydrol
Motif
Other DBs
NCBI-ProteinID:
QXM06513
LinkDB
All DBs
Position
complement(353967..355964)
Genome browser
AA seq
665 aa
AA seq
DB search
MNREEARSKIDELIEMLNEHNYKYYVLDSPEITDYEYDQMMDELIHLEKSFPELIRDDSP
TQRVGGEPLSAFSQVQHSVPMLSLSNSYNKEDLIDFDRSIRKIIGDKIEYVVEPKIDGLS
VGLKYEKGKFVQGATRGDGFVGEDITKNLRTIKTIPLRLKEEVDIEVRGEVYISREKFAE
LNQKQAEKGETIFANPRNAAAGSLRQLDPKVAAKRNLDIFVFNIQRMENMHINTHTEGFE
YLKKLGFKTSMYKVCQSIKEVIEQCEKWAEKRSQLAFDIDGLVIKVNDLYQREKIGLRSK
SPKWAIAYKFPAQQKKTKVKNITVQVGRTGALTPTAELEPVRVAGSVISRATLHNEDYIK
EKDIRIGDTVIIEKAGDVIPAVVRVLFDERTGDEKQFSMPTICPVCKEETVRLEGEAVTR
CINAACPAQLRRGLIHFVSRDAMNIDGLGESIVTLLLENNLIKDAADLYYLKKEDILPLE
RMGEKSAQNLINAIEKSKKNDLDRVIFGLGIKLVGSRAAKLLADAFGSMDVLMNASEEQI
TNIPEIGHKMAESIVAFFKEDRNLEIIEKLRTAGVNMKAIKKSDENDKIEKKFEGLTFVL
TGTLKKYKRSEAKKIIEDLGGRVSGSVSKKTDYVLAGAEAGSKLDKANNLGIKVISEEEF
EQMIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatagagaagaagcacgtagtaaaatagatgaattaatagaaatgctaaatgagcat
aactataaatactatgtactggatagtccagaaattacagattatgaatatgatcaaatg
atggatgaattaattcatttagaaaaaagttttccagagctgattcgtgatgattcacca
actcaaagagttggtggagaaccattatcagcatttagtcaagtacagcatagtgtacct
atgctaagtcttagtaattcatacaataaagaagatttaattgattttgatagaagcatt
cgaaaaattattggtgataaaatagaatatgttgtagaaccaaagattgatggattgtca
gtaggattaaagtatgaaaagggtaaatttgtacaaggtgctacccgtggggatggattt
gtaggagaagatattacgaagaatttgcgtactataaaaactattccgttgagattaaaa
gaggaagttgacatagaagtaaggggagaagtttatatttcccgggaaaaatttgcagaa
ttgaatcaaaaacaagcagaaaaaggagaaactatttttgcaaatcctagaaatgcagca
gcaggttctttaagacagcttgaccctaaagtagcagccaaaaggaatttagatatattt
gtttttaacattcaaagaatggaaaatatgcatattaatacacataccgaaggctttgaa
tatctaaagaaattagggtttaaaacttctatgtataaagtctgtcaaagtataaaggaa
gttatagagcaatgtgaaaaatgggcagagaaaagaagtcagctagcttttgatatagat
ggtttagttattaaagtgaacgatttatatcaaagagaaaagattggcttaagatcaaag
agtccaaaatgggctattgcttataaatttcctgctcagcagaaaaagacaaaggtaaaa
aatattactgttcaggtaggaagaacaggagctttaactccgacagcagagcttgaaccg
gtaagagtagctggttctgttattagtagagcaacacttcataatgaagattatattaaa
gaaaaggatattcgtattggagatacggttattatagagaaggctggagatgtaatacca
gctgtagtacgtgtactctttgatgaacgaacaggagatgaaaaacaatttagtatgcct
actatttgtcctgtttgtaaagaagaaactgttcgattagaaggagaagctgttacaaga
tgtataaatgctgcttgtcctgctcaattaagaagaggacttattcattttgtatctaga
gatgctatgaatattgatgggcttggagagtctattgttacattgcttttagaaaataat
ttaattaaagatgctgctgatttgtattatttaaaaaaagaagatattcttccattagag
agaatgggagaaaaatctgctcaaaatttaataaatgctatcgaaaaatctaaaaagaat
gatttagatcgcgtaatttttggattaggcattaaattggtaggatcaagagcagctaaa
ctcttagcagacgcttttggtagtatggatgtattgatgaatgcaagtgaggaacaaata
acaaatattcctgaaattggacataaaatggcagaaagtattgtagcttttttcaaagag
gatagaaaccttgagatcatagaaaagctaagaactgctggggtaaatatgaaggctatt
aagaagagtgatgagaatgataaaatagaaaagaaatttgaaggattgacatttgtttta
acaggaacacttaaaaagtataaaagaagtgaagcaaaaaaaataatagaggatttaggt
ggaagagtttctggtagtgtaagtaaaaaaacagattatgtattggcaggagctgaagca
gggtcgaaattagataaagcaaataatcttggaataaaagttattagtgaagaagaattt
gaacagatgattcagtaa
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