Capsella rubella (pink shepherd's-purse): 17884156
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Entry
17884156 CDS
T02984
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17884156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17884156
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
17884156
Complex C
U5 SnRNP specific factors
17884156
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Septin
EF-G_D2
Ras
SOI
Motif
Other DBs
NCBI-GeneID:
17884156
NCBI-ProteinID:
XP_006286997
UniProt:
R0H587
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDDEVEEDEDNQPEENGHGSDGEQGGPNGWITTINDVE
MENQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRDIRFEVGVKDQSTY
VSTQFLIGLMSNPTLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNVKNEKHMKYTDTR
VDEQERNISIKAIPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDA
AEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISV
ASTKAGDLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRLWGDVY
YHPDTRVFKRTPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNSAY
KLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPREAAARKVGHAYTGPKDSPIYESMVEC
DPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSIRVLGEGYSPEDEEDMTIKEVT
KLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLSVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDKGLAEDIENGVVSID
WNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLM
EPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCVSVFDHWAIVPGDPLDKSILLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
GNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttatatgatgagtttggtaactacattggacctgagattgagtctgac
agagagagtgatgatgaagtagaagaagatgaagataaccaacctgaagaaaacgggcat
ggatcggatggtgaacaaggaggtccaaatggctggattaccacaatcaatgatgttgag
atggagaaccagattgttcttcctgaggataagaagtactaccctactgcagaggaggtt
tatggtgaggatgttgagacattggttatggatgaagatgaacagcctcttgagcagccc
attatcaaacctgttagagatattaggtttgaggttggggtcaaggatcagtcgacatac
gtctcaactcagtttcttatcggcctcatgtctaatcccacccttgtgaggaatgttgct
cttgtgggtcatctacagcatgggaaaactgtcttcatggatatgttggtagagcagacg
catcatatgtctactttcaatgttaaaaacgagaagcatatgaagtatacagacacgcga
gttgatgagcaggagagaaatatatcaattaaggccattccaatgtctcttgtccttgag
gacagtagatccaaatcatacctgtgcaatatcatggatactcccggacatgttaacttc
tctgacgaaatgactgcttctctaagacttgccgatggtgctgttctcatcgttgatgct
gctgaaggagtcatggtaaacacagagagagctattcggcatgcaatccaggaccgtctt
ccaattgttgttgtgatcaataaggttgacaggctcataactgagctcaaactacctcca
agggatgcttactataagcttaggcatacaattgaagtcattaataaccacatatctgtt
gcttcaacaaaagctggagacttaccccttatagaccctgcagccggaaatgtatgtttc
gccagtggtacagccggatggtcttttacattgcagtcttttgctaaaatgtatgccaag
cttcatggggtggccatggacgtggataagtttgcatctcgactttggggagatgtttat
tatcatcctgacacaagggtattcaagagaactcctccagtaggtggtggagaaagagca
tttgtccagtttattctggagcctctatacaaaatatacagccaagtgataggtgaacat
aagaagagtgtagagaccacccttgcagaattaggagtgactctgagtaatagtgcatat
aagcttaacgtcagacctttacttaggttagcctgtagctcagttttcggttcggcatca
gggttcactgatatgttggtaaagcacattccttcccccagagaggctgcagctaggaaa
gtcggccatgcatacactgggccaaaagattctcccatttatgaatcaatggtagaatgt
gatccatctggacctctcatggttaatgtgacaaagctgtacccaaagtcagatactagt
gtgtttgatgtgtttggaagagtttatagtggtaggcttcaaacagggcaaagcatacgt
gtactaggagaagggtattcacctgaagatgaggaggacatgactataaaagaagtgacc
aagctatggatatatcaagcaaggtatagaataccagtaagcagtgcccctcccggttca
tgggttctaattgaaggtgttgatgcgtccatcatgaaaactgcgactctgtgtaatgca
agctacgatgaagacgtctacatattccgagcgctccaatttaataccctctcagtagtt
aagactgctaccgagcctttgaatcctagtgagctacctaaaatggtggaagggcttaga
aaaattagcaaaagctatccccttgcgattaccaaagtcgaggagtctggagaacatact
attttaggcacgggtgagttgtacttggattccatcatgaaggacctcagggagctctat
tcagaggtggaagtaaaggttgcagatccggtggtctccttctgcgagacagtggttgaa
tcttcgtcgatgaagtgttttgctgagacaccaaacaaaaagaacaaaataacaatgatt
gcagagccgttggataaaggacttgctgaggacattgagaatggcgttgtaagcattgac
tggaacagaaaacaactcggtgacttcttcaggacgaagtatgactgggatttacttgct
gcgcgttccatttgggcttttggtcctgacaaacaggggccaaatattttgttggatgac
accctcccaaccgaggtcgaccggaacttgatgatggcagtgaaagactccattgttcaa
gggttccagtggggtgcccgtgaaggtcccctctgtgatgagcccatcaggaatgtaaag
ttcaagattgttgatgcacggatagcaccagagccgctgcatagaggatctggtcagatg
attccaacagcaagacgtgttgcatattctgcctttcttatggctactccaaggctgatg
gaacctgtgtactatgtggagatacaaacaccaatcgactgtgttactgcaatctacaca
gttttgtcacgtagacgtgggcacgtaacatctgatgttcctcagcccggtacccccgct
tatattgtgaaggcttttctacctgtgatagaatcatttgggtttgagacagatctgagg
taccacacacagggacaagctttctgcgtctctgtatttgatcactgggccatagtgcca
ggagaccctcttgacaaaagcatcctattgcgcccacttgagcctgcccctattcagcac
ctagctcgtgaattcatggtcaagacccgccgtagaaagggaatgagtgaagatgttagt
ggcaacaagtttttcgacgaggccatgatggtggagttggcccagcagacgggtgatctt
catcttcagatgatgtga
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integrated database retrieval system
