Capsella rubella (pink shepherd's-purse): 17894090
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Entry
17894090 CDS
T02984
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
17894090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17894090
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
17894090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
17894090
NCBI-ProteinID:
XP_006301240
UniProt:
R0IBX6
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITKPNPNGFEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLIRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEDRLRKEFETEGQILSAKEKAETSDSNVITPGTPFMAILSVALQYYIQ
SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGSANAASDIPIHKKKYQF
LNIWILREYLQYELAIPDPPFVINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MHVYRKEFSIMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQR
SRRDPSEAPPEPIDDKIKLGEPGYKERYYAEKFSTNNPEETEPIKQDMVLKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALP
GEYRKLMTNPSSPILKFYPADFEIDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTV
EERQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHLPPHEFIPWTIDPNSSQGMNGFLWIS
ERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPF
PPLWHEDNSNRRRQSRDRPQVAGAIAGPSLGEAAHRLIKNTLNMKSSTGSASGLIDPNGY
YRNVPGNNYYGGVNRPRAPGPSYRKAYEDDSSYYYYGKYNNSSQGTFSNGPRYPGQSNGS
QDYNRNYNSKAVVEQQNRGGLRSGMSGLSIDDNGSRSKQLYSSYTEAANANLNPLPSPPT
QWIGTQPGGNFVGGYYREGVGYGETNGKPAKKVIYQAKTQPSYRGANI
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttttacagatggctcgcggaccgatacccgaagtcaattagcgat
gttgttgaggaagaacctaccgatggaggtcgtggtgacctaattcctgttgatatcact
aaacctaaccctaatgggttcgaatttgataatttgtatcttgatatgaatggtatcatt
catccttgttttcatcctgaaggaaagcctgcccctgccacatacgatgatgtatttaaa
tcgatgtttgagtacattgaccatctttttactttaatacgtccgaggaagattctttat
atggctatagatggagttgcacccagggcaaagatgaatcagcagcgttctcgacgtttc
agggctgcaaaggacgcagcagaggctgaagctgaggaagataggttaagaaaagagttt
gagactgaaggccaaatcttgtctgctaaagagaaagcagaaacctcagattcaaatgtc
attactcctgggaccccttttatggctatactgtcagtagctcttcagtattacatccaa
tctaggttaaaccataaccctggttggagatatgttaaggtaattctttctgattcaaat
gttccgggcgaaggagaacacaagataatgtcatacattcgtcttcaacgtaatcttcct
ggttttgatccaaatacaaggcattgtctgtacggtctggatgctgatttgataatgctc
tcattagccacacatgaagttcacttttcaatcttaagagaggttatcacttaccctggg
caacaagagaaatgttttgtctgtggacaaactggtcactttgctgcagattgccctgga
aaatcaggtagcgcaaatgcagcatcggatattccaatccacaagaaaaaatatcagttc
ctgaacatttggatattgcgagaatatctgcaatatgaattggccattccagaccctcct
tttgtgatcaattttgagagaattatagacgacttcgtcttcctttgcttttttgttggc
aatgacttcctacctcatatgcctacactggaaattcgagagggagctataaacttgctg
atgcatgtttacagaaaggagttttcaattatgggaggctatctaacagattctggtgag
gttttactagatagggtagagcatttcattcaagctgttgctgttaatgaagataaaatt
tttcagaaaagaacacggataaaacagtcaatggacaacaatgaagaaatgaaacaaaga
tcaagaagagatccatctgaggcaccacctgaaccgatagacgataagattaagctagga
gaaccgggctacaaggagaggtattatgcagagaaatttagtacgaacaatccagaggaa
actgagccaattaaacaagacatggtgctaaaatatgttgaagggttgtgctgggtttgc
cggtactactaccaaggtgtatgctcatggcaatggttttacccataccattatgctcca
tttgcttcagatcttaagaatctatctgatttggaaatcacatttttcattggagagccc
tttaaaccttttgaccaattaatgggaaccctgccggctgcaagctcaaatgctctgcct
ggagaataccgaaagttgatgactaatccctcatccccgatcctgaaattttaccctgct
gattttgagattgacatgaatggaaagcgctttgcctggcagggtattgcaaagcttcct
ttcattgaggagaaattattgttagctgctacaaggaagcttgaagaaacgctaacggtc
gaagaacggcaacgcaacagcgtgatgcttgatttgttatacgtacaccctgctcatcca
ctgggccagcggattctgcagtactaccatttctaccagcacttgccaccacatgaattt
attccatggacgattgacccgaattctagccaaggaatgaatggttttctttggattagt
gaaaggaatggtttccaaactagagtggattcccctgtcaatggtctaccatgcattgag
cagaaccgagccttaaatgttacatacctgtgtcctgccaaacactctcatatatccgaa
ccaccaagaggagcgatcattccggacaagatcttgacgtcagtagatataaagccattt
ccccctttatggcatgaagacaatagcaaccgacgccgacaatcccgagataggccccag
gtggctggagctatagctggaccttcgctgggagaagcagctcatcgtctgatcaaaaac
acccttaacatgaaatcctctactggttcggcttcaggattaattgacccgaatggatat
taccgaaatgtaccgggtaataactattatggtggagtcaatagaccaagagcaccgggt
ccttcttacaggaaagcttatgaagatgactcgagctattattactatggaaagtataac
aatagctcacagggaacatttagcaacggtccaagatatcctggtcaatcaaatggatca
caagactataaccggaactacaactccaaggcagtagtagagcagcaaaaccgtggtgga
cttagatctggaatgtctggtttatctattgacgataacggaagcagaagcaaacaattg
tattcaagttacactgaagctgctaatgcaaatttgaacccgttaccctcaccacccacc
caatggatcggtacacaaccaggtggtaatttcgtcggaggatactaccgggaaggagtt
gggtacggtgaaacaaatggaaaaccggcaaagaaagtaatttatcaggccaagacacaa
ccaagttatcgaggcgcaaacatatga
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