Magallana gigas (Pacific oyster): 105321022
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Entry
105321022 CDS
T03920
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105321022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105321022
Spliceosome [BR:
crg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105321022
Complex C
U5 SnRNP specific factors
105321022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
105321022
NCBI-ProteinID:
XP_034311065
UniProt:
A0A8W8M7L8
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All DBs
Position
7:complement(46726795..46736202)
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AA seq
973 aa
AA seq
DB search
MDQDLYDEFGNYIGPELDSDDDDEEDSDDEREEHADREYGDDDDEMEQDDDHNEMQVVLH
EDKKYYPTAEEVYGPEVETIVQEEDNQPLTEPIIAPVKKKKFAMTEQDLPATSYNMEFLA
DLMDTPELIRNVTLCGHLHHGKTSFVDCLIEQTHPEIYSSDDKDIRYTDTLFTEQERGVS
IKASPVTLVLPDSRNKSYLMNLFDTPGHVNFSDEVTAAFRISDGVVIFIDAAEGIMLNTE
RLLKHAVQEKLPVTICLNKIDRLMLELKLPPTDAYYKLRHTLEEVNSLLSVYSEDETGVT
VSPLLGNVCFASSYYRFCFTLGSFAKIYSDSFGGINDKEFARRLWGDIYFNSKTRKFTKK
PPSSSSQRSFVEFVLEPMYKIFAQVVGDVDECLPRLCDELGISLTKEERKLNIRPLLRLV
CNRFFGDFTGFVDMCVNFIKSPVDNAQTKIENIYTGGSDSDLVEHMCQCDPDGPLMIHTT
KLYPTQDATSFHVLGRIMSGTLLANQEVRILGENYSLQDEEDSRFGQVGRLWISEARYKV
EVNRVPAGNWILIEGIDQPIVKTSTITDVSNSDEVYIFRPLKFNTSSVIKIAVEPVNPSE
LPKMLDGLRKVNKSYPLLTTKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVADPV
VSFCETVVETSSLKCFAETPNKRNKLTMIAEPLEKGLAEDIENEVVQITWPRKRLGEFFQ
TKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGAVKDSIVQGFQWATREGPL
CDEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRMMEPYNFVEVMAP
ADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLS
VFHHWQIVPGDPLDKSILIRPLEAQPATHLAREFMIKSRRRKGLSEDVSINKFFDDPMLL
ELAKQDVMQSYPM
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggatttgtatgacgagtttggaaattacatcggcccagagcttgatagcgat
gacgatgatgaagaggattctgacgacgaacgggaggagcatgctgacagggaatatgga
gatgatgatgatgaaatggaacaagatgatgaccacaatgaaatgcaggtggttctacac
gaggataagaagtattatccaacagcagaggaggtgtatggcccagaggtggagaccatt
gttcaagaagaagacaatcaaccattgacagaaccaattattgcccctgtcaaaaagaag
aaatttgccatgactgaacaggatcttccagcaacttcatacaatatggagtttttggcg
gacttgatggacacaccagaactgataagaaatgtaaccctttgtggacatctacaccat
ggcaagacctcttttgttgattgtttgattgagcaaactcatccagaaatatacagcagt
gatgacaaagatattcgttacacagacactctcttcacagaacaagagagaggtgttagt
ataaaagcctccccagtgacgctggtcctaccagattccagaaataaatcctacctgatg
aatctgtttgatacgccaggtcacgtgaatttctctgatgaggtgaccgcagctttcagg
atcagtgatggagtggtcatattcattgacgcagcagagggaatcatgctgaacactgaa
agactcctcaaacacgctgtccaggagaagctccctgtcaccatctgtctgaacaagatt
gatcggcttatgttggagctgaagctccctcccactgatgcttactacaagttgagacat
actctggaggaggttaactcgcttctgagtgtttactcagaagatgagactggtgtgaca
gtttctccactgcttggaaatgtgtgctttgccagttcttactacagattctgtttcact
ttggggtcttttgccaagatttacagtgattcatttggtgggataaacgacaaagaattt
gcaagaagactttggggtgacatttacttcaatagtaaaacgagaaaattcacaaaaaaa
cctccctcgagttcatctcaaagaagctttgtggaatttgttctggaacctatgtacaag
atttttgctcaggttgttggtgatgtggatgaatgcctaccaaggctgtgtgatgagtta
ggtatatcgcttacgaaggaggagaggaaattgaacattcgacctttgctaaggcttgtt
tgtaaccggttctttggagatttcactgggtttgtggacatgtgtgtgaactttataaag
tccccagtggacaatgcccagaccaaaatagaaaacatctacacaggaggctcagacagt
gacctggtggagcatatgtgtcagtgtgacccagatggacctttaatgatccacaccacc
aaactatatcccacccaggacgcgaccagttttcatgtgctgggccgcatcatgagtgga
actctattagccaatcaggaagtccgaattctgggagagaattattctctccaggacgag
gaggactcgagatttggacaagtaggacgtctctggatttctgaggccaggtataaggtg
gaggttaatcgcgtgccagcagggaactggatcctgattgagggcattgaccaaccaatt
gtgaagacatcaaccattactgatgtgtctaactctgatgaggtgtacattttcagacca
ctaaaatttaatacaagttctgtcatcaaaatagcagtggaacctgttaatccctcagaa
cttccaaaaatgttggatggattacggaaggtcaacaagagttatccactccttaccacc
aaggtagaggagtctggagaacacattatactgggtacaggggagctgtacctggactgt
gtcatgcatgacctgagaaagatgtactcagaaatagatatcaaggtagctgacccagtt
gtctctttctgtgagacagtggtggaaacatcttcactgaagtgttttgctgaaactccc
aacaagaggaataagctgacaatgattgctgaacctctggagaaaggtttggcggaggat
atagaaaatgaagttgtacaaatcacctggcctaggaaaagactaggagagtttttccag
acaaagtacgattgggatctgttggctgctcgatctatctgggcctttggaccagacgcc
acaggtccaaatatcttggtggacgacacgctgccatcagaggtagataaaagtttactt
ggagctgtgaaggacagcatcgtccaaggatttcagtgggcaaccagagaaggtccactg
tgtgatgaacccatcaggaatgtaaagtttaagattctggacgcagtgattgcccaggag
cccttacaccgtggtggaggtcagataatccccactgctaggagagtggcctactctgct
ttcttgatggccactcctcgtatgatggagccatacaactttgtggaggtgatggcccca
gctgattgtgtgtcagcagtttacactgtcttggccaaacgcagaggtcacgttacccag
gatgcaccagtgccaggttcgccactgtacacaataaaggcattcattcctgccattgac
tcattcggattcgaaacagatctgaggacacacacacagggacaagctttctgtctgtct
gtgtttcatcactggcagattgtgccaggagatcccctggataagagtatcctgattcga
cccctagaggctcagcctgctactcatttggccagagagtttatgatcaaatctcggcgt
agaaagggtttgagtgaggatgtcagtatcaacaagttcttcgacgaccctatgttgctg
gagttggccaaacaagatgtgatgcagagctacccaatgtaa
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