Crassostrea gigas (Pacific oyster): 105324078
Help
Entry
105324078 CDS
T03920
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
crg04054
]
105324078
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105324078
Pattern recognition receptors [BR:
crg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
105324078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
RIG-I_C-RD
RIG-I_C
SWI2_SNF2
CARD_2
AAA_22
CARD
AAA_19
SLFN-g3_helicase
Helicase_C_2
STL11_N
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
105324078
NCBI-ProteinID:
XP_011421434
LinkDB
All DBs
Position
LG4:complement(51304758..51331916)
Genome browser
AA seq
1139 aa
AA seq
DB search
MVSLYRPLLKDCIGGTDLLSDLGDVIDEDGRREVRRAWKKEGASGSMQVLLGLIDANPHH
HKWEIFYKALRNNDFEHVITALKYEKIPQTVRKVYSELLLQPENIKQLHDLLSSDSQKKL
VERNVLFNEDIDNISSEREKTESDTAAVLVLLDRLWRKNTKWIEELSNIFKSKDVVFSQK
LFLYSTGAEETEPKEVSNVVKEDSGVTMTYVDRDRRQKAKSEQEETEPKTLLHTDANLLH
MASGTSESNRVTETESSPVTFSTDLHVHENTRLSDLPERVGESLSTLHTEPCVGESTRLS
DLPKKVGESLSTLSTESCVGGSTRLSNLPKKVGESLSSLSTESCMRGSQEISISDPGEYI
SIESPREVHQNSAREVTTGEIDQIGEVLDATVERSRLRNDSAMYRDEESEVSSDKDDGPR
SAREKDINEATEKETFPTLTMRNYQLELAEIALSGRNTIICAETGTGKTYVALYLTQQHL
ASKNDACVVFLARTNALVEQQYEKFSRFLYKYKVYHLKTDKTAAMGRKLAMAKENHQIFF
MTPQILLNNINSKQISLREVSLLILDECHHTRKREPYNNVMKQYLHLKRDSKKTSLPQVL
GLTATIGVGKSSTLDGAVSHILSVCASLDVLDISMVKNNKEELESHVAIPKRETKKLMEK
EKDLPKQIILEKMELIEKYVAKTEVVNQPKLKKQWDKKPKKRDGKQYQKWTIHLRNRVIC
KLKTEPPLLRQLHAALTHLSTYNEALAVNYLMNSTHVAEFLKQKLADDIKQHKVILKEKA
SFNDAEDKLLRYHEEVCQQLELLRGVTNDHLKTLRDILVELRTDLGDDVKGMIFVETRAT
AFALAKYITEELKMMGYRAAPFTGSKSSDSSEGMLEEEKTDTLKKYRKGEINLLVATSVG
SEGIDVPDSNFIITYNYTGNEADIMQMSGRARRQDSTVTHISDQTIQRREETSLQKALLM
ARAFDRLGDMKEEDRHRKIREQQTTIKDTEIGSFFLENSVTKETMSFAIICWKCQAFAVH
GDDVRIYTGQHRIVLDPDFLDRCVLEDLDETSRFKKRIIRCKECKTKWGTTFGVDEFEVP
VLKVKAFLFVPGYTGGDLSEWKERKRFKTWGRVEFAITNIGKTKLIENLNNRKNDVITT
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccctctaccggcccttgctgaaggattgtatcggtggaactgaccttctgtct
gacctcggtgacgtcatagacgaagatggcagacgggaggtccggagggcgtggaaaaag
gaaggagcctcggggtccatgcaggtcctactgggtctgatagacgccaacccccaccat
cacaaatgggaaatcttctataaggctctgagaaataacgattttgaacacgtgatcact
gccctgaaatatgaaaagattccccaaactgtacggaaagtgtattccgaacttttacta
caacctgaaaacatcaagcaattacatgacctcctgagctctgattcgcaaaagaaattg
gtagaaagaaatgtgctgtttaatgaagacattgacaacatttcatcagaaagagaaaag
accgaaagtgacacagccgccgttttggtacttttggacagactgtggagaaaaaacacg
aagtggattgaggagttgtcgaacattttcaaatcgaaggatgtcgtcttctctcagaag
ctttttctgtacagtacaggtgcggaagaaacagaaccaaaggaagtttctaatgttgtc
aaagaagacagtggcgtcacaatgacgtatgttgatagagaccggaggcaaaaagccaag
tctgaacaggaagagaccgaaccaaaaacattgctacatactgacgccaacctattgcac
atggcatcgggaacatccgaaagcaatcgtgtaactgagacggaaagtagtccggtcact
ttctccacagacctacatgtacatgaaaacacgagactctcagacttacccgaaagagtc
ggagaaagtctgtccactttgcacacagaaccctgcgtgggggaaagcacacgtctctca
gacttacccaaaaaggtcggagaaagtttgtccactttgagcacagaatcctgtgtgggg
ggaagtacacgtctctcaaacttaccaaaaaaggtcggagaaagtttgtcgtctttgagc
acagaatcctgcatgaggggatctcaagagatctcgataagtgaccctggagaatatata
tctatcgaatcaccacgggaggtccatcagaactcagctcgcgaagtaactacaggtgaa
attgatcagataggcgaggttttagatgctactgtggagcgatcccggctccggaacgac
tcggcgatgtatagggacgaagaatcggaagtgtcatcggacaaagacgacggtccgcgg
agtgcacgtgaaaaggacatcaatgaagccactgagaaggaaacctttcctacactgaca
atgaggaactaccagttagagttagcggaaatagctttgagtggtcggaacaccataatc
tgcgcagaaaccggaaccggaaaaacatacgtggcgctctacctcacacagcaacatctt
gcaagcaaaaatgacgcctgtgttgttttcttggctcgaacaaacgccttggttgaacaa
cagtacgagaagtttagtaggttcctatacaaatataaggtttatcatttaaaaacggac
aaaaccgcggcaatgggaaggaagctagcaatggcgaaagagaaccaccagattttcttc
atgactccccagattctgttgaacaacataaacagcaaacagatctctctacgggaagtg
tctctcctgattctggatgaatgccatcacacgcgcaagcgcgagccgtacaacaacgtg
atgaagcagtacctccacctgaagagggacagcaagaaaacctctcttcctcaggttctt
ggactaacggctacaataggggtgggtaaatccagtaccctggacggggccgtgtcacac
attctaagcgtgtgtgcaagtttagacgtattagacatttcaatggtcaagaacaacaaa
gaggaattagaaagtcacgtggcaataccaaaacgagaaaccaagaaattgatggaaaag
gagaaagacttacccaaacaaatcattttggaaaaaatggagttgattgaaaaatatgtt
gcgaaaactgaagtcgtcaatcagccgaaactgaagaaacaatgggacaaaaaaccaaag
aaaagagatggtaaacaatatcagaagtggaccattcatctgagaaatagagtgatctgt
aaactgaaaacagagcctccactcctgagacagttacacgcagctctcacacatctgtcg
acctataacgaggctcttgctgtcaactacttaatgaacagcacccacgtggcagaattc
ctgaagcagaagttggcagacgatataaaacagcataaggtgatactgaaggagaaggcg
tcttttaatgacgctgaagataaacttttgcgatatcatgaagaggtttgtcagcaattg
gagttattgagaggtgtcaccaatgaccatcttaagactttgagggatatcctggtggag
cttcggactgaccttggcgatgacgtcaagggcatgatcttcgtggagaccagagccact
gcctttgctctcgcaaaatacatcactgaagaattaaaaatgatgggatacagggcagcg
ccattcaccggaagtaaatccagtgacagcagtgaaggtatgcttgaggaagaaaagacc
gacactttgaagaaatacaggaaaggggagatcaatctattggtggcgacctctgtcggc
agtgaggggattgatgtcccagacagtaacttcatcatcacctacaactacaccggaaac
gaggccgacatcatgcaaatgagtggacgtgcaagacgacaggactccacagtgactcac
atctctgaccagacgatacagcgccgagaggagaccagtctacagaaagccctactgatg
gcgcgtgcgtttgaccgcctgggtgacatgaaggaggaggaccgacacaggaagatccgg
gagcagcagacgacaataaaggacacagaaatcgggtcctttttcctggaaaactcagta
acaaaagaaaccatgtcattcgccattatctgctggaaatgtcaggcgtttgcagtacat
ggcgatgacgtcagaatttacaccggtcagcaccggattgtacttgatccagactttctg
gaccgctgtgtgctggaggacttggacgaaacttcgaggttcaagaagcggattatccgt
tgtaaggaatgtaaaacaaaatgggggaccacgtttggggtggacgagtttgaagttcct
gtcctaaaggtgaaagcctttctgttcgtcccagggtacaccgggggagatttgtcggag
tggaaggaacgtaagcgcttcaagacctgggggagagtggagttcgccattacaaacatc
ggcaaaaccaagctgattgagaatctcaacaacaggaaaaatgacgtcatcaccacgtaa
DBGET
integrated database retrieval system
