Magallana gigas (Pacific oyster): 105337126
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Entry
105337126 CDS
T03920
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105337126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105337126
Membrane trafficking [BR:
crg04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
105337126
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C9orf72-like
HI0933_like_1st
Thiaminase-1_dom
Motif
Other DBs
NCBI-GeneID:
105337126
NCBI-ProteinID:
XP_065921833
LinkDB
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Position
7
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AA seq
485 aa
AA seq
DB search
MSASKNIKKIIRNMSAGVIQIGSQEKEEPVHSFSGEITPLSPSSKFTESSIDIPGQNLIK
YMMLSHWDNILGPRVVHVWNMGTDSLDSGFLSRISSQSLSGEICREVTSFIDHKMYEIPD
ADVFVTAFIFTAMGISGPCVHTLSIVIQKSDMTFFLNIQQLFLKCFERIIRKFKVNLDQV
SLDSTFESTYKDFDDCCHPCIENIGYLKKSVFPQKIVLSSTYLCPAHHLDRDFLSCCISS
HLSTFGRSLVIGDKVDTVNMMLKTLSLFNSPKERCCSRLVQQNEPSQYHHDMWLQGQVQT
SDHLDLPVPEILYSGYPTTLIDLSQKMVRESPTYSEHVTHAQDQWYNELVGLQYGMVEPC
IPQGELFSQHEKSDTLVSGLLDELDKLPSDCGVREAYIQQFNRSIQYKALCIIKYVEGET
NSGTIPFRGEYKKLQKDVCILSEGDFRIYLSAAEKLKPGLIGFLYSKYSREHSNSGLSTS
KPYVR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttccaagaatattaagaagatcattcggaacatgagtgctggtgtgatccag
attgggagtcaggaaaaagaggagccagttcattctttctcaggggaaataactcctctg
agtccttcatccaaattcacagaatcaagcattgacattccaggacaaaacttgatcaaa
tacatgatgctgtctcactgggataacattcttggaccacgagtggtgcatgtctggaat
atgggaaccgattctttggattccggtttcttgtcacgcatcagtagtcagagtttgagc
ggggagatctgccgtgaagtgaccagtttcatagaccacaagatgtatgaaatcccagac
gctgatgtttttgtgactgcatttatctttacagccatgggtatcagtggcccttgtgtt
cacacactgtctatagtgatacaaaaatcagatatgacattctttttaaatatacagcag
ctgtttctgaagtgttttgaaagaataattcggaagttcaaagttaatcttgatcaggtt
tcacttgactcaacatttgaaagtacttacaaggattttgatgattgttgtcatccttgc
attgaaaacattggatacctgaaaaagtctgtctttccacagaaaattgtgctgtcttct
acatacctgtgtccagctcatcatctagaccgagactttctgagttgctgtatcagctca
catctatcaacatttggtaggagcttggtcattggggacaaagtagatactgttaacatg
atgttaaaaactctaagtttgtttaattcacctaaggagagatgctgttctagacttgtt
caacagaatgaacctagccagtaccaccatgacatgtggctccagggccaagtccagaca
tctgaccatttggatctgcctgttcctgaaatattatacagcggctaccccaccacactg
atcgacctgtctcagaaaatggtccgggaatcccctacctacagcgaacatgtgacccac
gcccaggaccagtggtacaatgagctggtcggactacaatatggcatggtggagccctgc
attcctcaaggagaattattctctcaacatgaaaaatcagacaccctagtctctggatta
cttgatgaacttgacaagctgccatcggattgtggtgtacgagaggcttacatacagcag
tttaaccgaagcatacaatataaggccctgtgtatcatcaaatatgtagagggcgaaaca
aattcaggaacaattccatttagaggggaatataagaaactccaaaaggatgtatgcatt
ctttctgaaggcgacttcaggatttatttgtctgcggcagagaaactaaagccaggattg
attggatttttatattcaaaatattctcgagaacattcaaattctggcttgtccactagt
aaaccttatgtacgatga
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