Magallana gigas (Pacific oyster): 105348659
Help
Entry
105348659 CDS
T03920
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04120
Ubiquitin mediated proteolysis
crg04140
Autophagy - animal
crg04144
Endocytosis
crg04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105348659
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105348659
04140 Autophagy - animal
105348659
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
105348659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105348659
04121 Ubiquitin system [BR:
crg04121
]
105348659
Enzymes [BR:
crg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105348659
Membrane trafficking [BR:
crg04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
105348659
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
105348659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-RING_UBOX
TRAF3_RING
U-box
zf-C3HC4_3
zf-RING_5
zf-rbx1
zf-Nse
RING_XB3-XBAT31
zf_UBZ
zf-ANAPC11
Sina_ZnF
zf-RING_6
KLRAQ
Tropomyosin
zf-TRAF_2
Nup54
DUF7491
MbeD_MobD
DUF1244
ZNF512_C2HC
DUF7479
Motif
Other DBs
NCBI-GeneID:
105348659
NCBI-ProteinID:
XP_011456499
LinkDB
All DBs
Position
5:complement(9475811..9490723)
Genome browser
AA seq
637 aa
AA seq
DB search
MIHRTNYLARRNDSKDACTEKGFQEDRVLHVVQKMTSERPLSSGLYEYTNEPRHSSPVSS
GSFTSGEGLSGREEGYDFDFIIRDEKYDCPICLLVLRDPLQTTCGHRFCKNCINKWLKES
DQRCPIDNMPITESQLFPDNFAKREILGLSVKCPNSKEGCQVIETLKNIQRHLDECQYVP
IPCPNRCSHILLRRDIQEHLSHICHKRTLICNQCSSEVLAEDMQEHEDDQCPMAMVQCPH
CAMELMREQLQRHYDHDCMRRSIDCVYSKLGCSVGKIPRSEMGKHIQENLHNHMQLMCQA
LTNIHRRLNIPANNQLTHSHSLPDRTEPFTPEDRRMVEGIGNGLSHAVNLLHLSDNPSLA
IPQAGPHSLDSFCPPDTSLRQLRGAQGSDERFGSERTQIDTELTYTSNPSNNLEGFPRVP
FDDEFQSLKSQNLSQDESLARHESALHDMKHKVEYHEKNNAALIKRVKSLENALTELEGR
CSNGVYFWRIKSYSKFRNEAESGEVTAIHSPAFYSSCFGYKICIRANLNGVDSARGTHLS
IFVHFMQGEYDDILEWPFSGRIMLSVLDQNPTCELRSHVMETLVAKPTLAAFQRPTTPRN
HKGFGYMEFLPLSVLDNSSYIRNDTLIIKAQIIGRSE
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgatacacagaacaaactatttagctaggagaaacgatagcaaggatgcatgtacagag
aaggggttccaagaggaccgtgtattgcacgtagtacaaaaaatgacgtcagagcgacct
ttgtcgtctggtctctatgagtataccaacgagccccgccattcatctcccgtcagttcc
ggaagctttacttccggagagggactttccggtcgggaggagggatatgactttgatttc
atcatcagagacgaaaagtacgactgtccaatttgtctccttgttttgagggatccattg
cagacgacatgtggacatcgcttttgtaaaaactgcatcaacaaatggctcaaggagtcc
gaccagaggtgtccgatagacaacatgccgatcacagaatcccagctgtttccggacaac
tttgcgaagcgcgaaattctgggcctcagcgtcaaatgccccaactccaaagaaggctgt
caagtgatcgagactttgaaaaatatccagagacaccttgacgagtgccagtacgtgccc
ataccctgtcccaacagatgcagccacatcctcctcaggagggacattcaggagcaccta
tcccacatctgccacaaaagaaccctcatttgtaaccagtgcagctcggaggtgttagcc
gaggacatgcaggaacacgaagatgaccaatgccccatggcaatggtacagtgtccgcac
tgtgccatggagttaatgcgtgaacagctgcaaagacactatgaccacgattgtatgcgg
cggtccatagactgcgtctactccaagctaggctgtagtgtaggaaagattcctagaagc
gaaatgggcaaacatatacaggaaaacctgcacaaccacatgcagcttatgtgtcaagca
ttaacgaacatccaccggcggctaaacatccccgccaataatcagctcacccacagccat
tccttacccgaccgaacggaaccattcacgccggaagacaggcgcatggtcgagggcatc
ggcaacggactaagccacgcagttaatctcttgcatttatccgataatccatcacttgca
atacctcaagcaggaccacattctctcgacagcttttgtccaccggatacaagccttcgg
caactgcgcggtgcccagggaagtgacgaaagattcggaagtgaacgaacgcaaatcgat
acagaacttacttatacctcaaatccgtctaacaatttagaggggtttcctagagtccct
tttgatgatgaattccagtcgctaaaaagtcagaacttatctcaagacgagagtttagca
aggcacgagtcggcacttcatgacatgaaacacaaggtggagtaccatgaaaagaataac
gctgctctaattaaaagagtaaaaagtctggagaacgccctcactgaactggaagggcgg
tgtagcaatggtgtatacttctggagaatcaaaagttattcaaagtttagaaacgaggcc
gagtcgggcgaggtaacggcaattcatagtccggcgttttattctagttgttttggatat
aaaatatgtattcgcgcaaacttaaacggagttgattccgccagaggaacacatctctct
atatttgttcattttatgcaaggtgaatatgacgatatcctggagtggccctttagtggt
cgtataatgttaagcgttctggatcagaacccgacctgtgagttacgatcgcacgtgatg
gagactttggtcgccaagccaacgctggcggcctttcagcgccccaccacccctcgtaat
cataaaggcttcggctacatggaattccttccactaagtgtcttggataattcttcgtac
attaggaatgatactttgataatcaaagctcagatcattgggagatcggagtga
DBGET
integrated database retrieval system
