Chryseobacterium rhizoplanae: KB553_21240
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Entry
KB553_21240 CDS
T08349
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crhi
Chryseobacterium rhizoplanae
Pathway
crhi03030
DNA replication
crhi03410
Base excision repair
crhi03420
Nucleotide excision repair
crhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KB553_21240 (ligA)
03410 Base excision repair
KB553_21240 (ligA)
03420 Nucleotide excision repair
KB553_21240 (ligA)
03430 Mismatch repair
KB553_21240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crhi03032
]
KB553_21240 (ligA)
03400 DNA repair and recombination proteins [BR:
crhi03400
]
KB553_21240 (ligA)
Enzymes [BR:
crhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KB553_21240 (ligA)
DNA replication proteins [BR:
crhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KB553_21240 (ligA)
DNA repair and recombination proteins [BR:
crhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KB553_21240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KB553_21240 (ligA)
MMR (mismatch excision repair)
DNA ligase
KB553_21240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KB553_21240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DUF7575
Zn_ribbon_3
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
UCA59509
LinkDB
All DBs
Position
complement(4676582..4678588)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNESYYLMDTPTISDYEFDMLLEELQDLEAKYPEFYDENSPT
MRVGGSITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPSQFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISDEIPAETHWDLLQ
KAQSWGFKTSQQVKLCKTLDEVKEFITFWDTGRHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPILLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTEDSREIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYRERLIENPADFYTLTKEQLLP
LERMAEKSAQNIITGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKAATVE
ELCQVEDIGAKIAVSIVEFFQNSENILMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTINILDEQQ
FLDLIEQQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaaaatagaacagctccgcaaagagctgcatcagcataac
gaaagctattacctaatggatactcctaccatttcagattacgaatttgatatgttatta
gaggagcttcaggaccttgaagccaaatatcctgaattttatgatgaaaactctcctacc
atgcgtgttggaggcagtattacaaaggtattcccaacaattcagcataagttcagaatg
tattctctggacaattcttatgattttgatgatctggaagactgggaaaagagaattatc
aaaactattgatgagcctgtagaatttgtagccgagttaaaatatgacggggcttcaatt
tctatcctttatgaaaacggaaagcttacacaggctgtaacccgaggagatggtttccaa
ggggatgagattactccgaatgtgcgtacgatttctgatattccattaacattaaaaggt
gattttccctcgcaattctttatgcgtggcgaaatttatttaaccagaaaaaattttgac
aagatcaataaacttcgtgaagaagaaggcctggatccattcatgaatccaagaaatacg
gcaagtgggagtttaaagatgcaggatagcggtgaggtaagaaaacgaggactttcttct
gtattatatcaattcatttctgatgaaattcctgccgaaactcattgggaccttcttcag
aaagcccaaagctggggattcaagacatcccagcaggtaaaactttgcaaaacgctggat
gaggtaaaggaattcattactttctgggatacgggacgtcataacctgcctttcgaaatt
gatggaattgtattaaaagtaaattccctgcaacagcagagacagcttggatatacagca
aaatctccacgctgggctatggcttataaatttaaggctgaaaaggtggaaactgagctt
caaagtgtttcttaccaggtaggaagaaccggagcaattactcccgttgccaacctgaaa
cctattctgctggccggaaccattgtaaaaagggcctcactgcataatgaagatatcatc
aaaaagcttgaccttcatgagaatgactttgtttatgtagaaaaaggaggcgaaatcatc
ccaaaaattgttggggtaaatacagagaaaaggactgaggacagcagagaaatagaatac
atcaaacattgtccggaatgtggaactgagctggtaaaaattgaagaccaggccattcat
ttctgccctaacgaacttcactgcccgccacaggtggttggaagaatgattcactatgtt
tcaagaaaagctttgaatatcgacaatctgggaagtgaaactattgaacagctgtacagg
gaaagattgattgaaaatcctgcagatttctatactctaaccaaagaacagcttctcccg
ctggaaagaatggcggaaaaatctgcacagaatatcattacaggaattgaaaaatcaaag
gaaattccatttgaaaaagtattgtacggaataggaatcaagcatgttggggaaacggtt
gccaaaaaactagtgaaaaacttccctacgattgaagaattaaaagccgctactgttgaa
gaactttgtcaggtagaagatattggggctaaaattgccgtaagcattgtagagttcttc
cagaattctgaaaacatattaatgatcgaacgtttgaaatcttatggagttcagcttgaa
aaaggagaaagtaccaatgaggtattatctaatgttttagaaggaaaaaccttccttttc
actggtaaattatccctattcaccagagaagctgccgaagaaatggtagagaaacacggt
ggaaagaatatttctgcagtttctaaaaaccttaactatcttgtggtaggggaaaaagca
ggaagtaagctgaaaaaagctcaggatattggaacgattaatatactggacgagcaacag
tttctggatttgattgaacaacagtaa
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