Corynebacterium rhinophilum: QP973_005505
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Entry
QP973_005505 CDS
T11205
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crhn Corynebacterium rhinophilum
Pathway
crhn03030
DNA replication
crhn03410
Base excision repair
crhn03420
Nucleotide excision repair
crhn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QP973_005505 (ligA)
03410 Base excision repair
QP973_005505 (ligA)
03420 Nucleotide excision repair
QP973_005505 (ligA)
03430 Mismatch repair
QP973_005505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crhn03032
]
QP973_005505 (ligA)
03400 DNA repair and recombination proteins [BR:
crhn03400
]
QP973_005505 (ligA)
Enzymes [BR:
crhn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QP973_005505 (ligA)
DNA replication proteins [BR:
crhn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QP973_005505 (ligA)
DNA repair and recombination proteins [BR:
crhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QP973_005505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QP973_005505 (ligA)
MMR (mismatch excision repair)
DNA ligase
QP973_005505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QP973_005505 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
BRCT_2
DUF8512
Motif
Other DBs
NCBI-ProteinID:
XME06612
LinkDB
All DBs
Position
1118457..1120526
Genome browser
AA seq
689 aa
AA seq
DB search
MDTVTNPADLQREWNDLAQEVRRHRNLYYNGEPAIPDADFDALFQRLVDLEKQHPELAVP
DSPTQQVGAAPNAGEDIEHLERMMSLDNVFSAGEMQDWLDRTPAKTYLTELKIDGLSIDL
VYRNGRLDTAATRGDGTVGEEITANARVISDIPHELTGTDEYPVPELIEIRGEVYMRPED
FEEINEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPSSQHD
AYKAIAAWGLPVSPYTKQVHSAAEVQEEVSYWAEHRHDAIFEMDGLVVKVDDLGSQRQLG
ATSRAPRWAIAYKYPPEQVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQ
SEVKRKGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWTFPTQCPACGTTLAPQKDG
DADWRCPNTQSCPAQLSARLEYLASRKGLDIEALGEKGAMDLIENGILLDESELFELTEE
KLLASDVYTAKRDTKDKRSKKEGNAKVNTAGKNLLQNLEEVKDRDFWRVLVSLSIRHVGP
IAARALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLA
MEVAAEDRKEQTLEGLTIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANA
GSKEDKARDLGVPILNEEQFHTLLNTGEV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
ttggataccgtgactaatccagctgatctgcaacgtgaatggaacgacctggcacaggaa
gtacgccgccaccgcaacctgtattacaacggtgaaccggcaattcccgatgccgatttt
gatgcgcttttccagcgcctggtggacttagaaaagcagcacccagagctggcggttccg
gattctcctacccagcaagtaggtgctgcgccgaatgccggcgaggacattgaacacctt
gagcgcatgatgagcctcgacaatgtctttagcgcgggtgagatgcaggactggctggat
agaacgcccgccaagacatacctgacggagctgaaaatcgatggcctatccatcgacttg
gtataccgcaacgggcgcttggacaccgctgctacccggggcgacggcaccgtgggcgag
gagattaccgcaaatgcgcgcgtcatttctgatatcccgcatgaactcacgggcaccgat
gagtacccagtcccggaactcattgaaatccgcggcgaggtgtatatgcggcccgaggat
ttcgaagaaatcaatgaggagcgcgcggcggacggcaaggctcggtttgccaatccccgc
aacgctgcggccggcggactgcgcatgaaggatcccgccgaggtgaaaaagcgccgcctg
cgcatggtttgccatggcctaggcgcgcgcgagggattttccccctcctcccagcacgat
gcctataaggccatcgccgcatgggggctgcccgtatcgccctataccaagcaggtgcac
tccgccgccgaagtacaagaggaagtatcttactgggccgaacaccgccacgatgcgatt
tttgaaatggatgggctcgtggtcaaggtggacgatttgggttcacagcgccagctcggg
gcgacctcccgcgcaccgcgctgggccattgcctataagtacccgccggaacaggtaaca
acaaagctgaagaacatcgaggtcggcgtggggcgtacggggcgcgttaccccctttgcc
atcatggaaccggtctttgtctccggctccacggtatccatggccaccctgcacaaccag
tctgaggtcaagcgcaagggcgtgctcatcggagacaccattattatccgcaaggcgggc
gaaatcattccagaggtactaggtcccgtgcgcgaacagcgcgatggcagcgaatacgaa
tggacctttcccacgcagtgcccagcctgcggcacgacgctcgccccgcaaaaggacggc
gatgctgactggcgatgccccaatacccaatcttgtccagcccagctctccgcgcgactg
gaatacctcgcctcccgcaagggcctcgatatcgaggcactgggagagaaaggggccatg
gacctcatcgaaaacggtatcctgctcgatgaatccgagctctttgagctaacggaagaa
aagctgcttgcttccgatgtctatacggccaagcgcgatacgaaggataagcgcagcaaa
aaagagggcaacgccaaggtcaataccgcgggcaagaacctgctgcagaacttagaagag
gttaaagaccgcgacttctggcgggtgctggtctcactttctattcgccacgtgggtccc
attgcggcgcgggcactcgcggcgcgctacggctccatggaaaagctgcgtgccgctaag
accgaggaccttgcagaggtagacggcgtgggcgcagtcattgcagaatccttccacgcc
tggttcgaggtggactggcaccgcaccatcgtcgagaaatgggcagaagccggcttagcc
atggaggtagctgctgaagacaggaaagaacagactctagagggcctgaccatcgttgtc
accggcagccttgaagacttcacacgcgattccgccaaggaagccatcatcagccgcggc
ggaaaggcaaccggttccgtatcgaagaaaacctcctacctcgtcgccggtgccaatgcc
ggctccaaggaggacaaggcccgcgacctcggcgtgcctatcttgaacgaagagcaattc
cacacgctcttaaacaccggggaggtatag
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