Chroicocephalus ridibundus (black-headed gull): 134511905
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Entry
134511905 CDS
T10910
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crid03036
]
134511905 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
crid03400
]
134511905 (SMCHD1)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134511905 (SMCHD1)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134511905 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
134511905
NCBI-ProteinID:
XP_063182720
LinkDB
All DBs
Position
2:complement(116203148..116287182)
Genome browser
AA seq
2033 aa
AA seq
DB search
MAAAAAAAGGRGARRPMLPRCSGDRTVFLFDRRLEQADPDEKVLSYGKDNYRGFRSAVCQ
AFGIATDENFVITTTSRKEITEDNFSELVQDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPANSQDVHELVLSKEDFEKKEKNRESIYSGYIRNRKPSDSTHITSDD
ERFLHSLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NAVTKDVSPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEG
IVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWATYAA
IEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYGEM
KVIPISKLDRTVSEKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKMEN
LQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLDLPFRIGVPF
NIPLELQDEFGHATQLTAGIKPILEASGLTLQYGEVTAGTKCIIKGVTAKGSINSCQGKN
FNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVKPDSEVLRIENGTAFPFQVEVLDESGNIT
AQPKLVVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEILSCKDV
PAVEKIIKLLPSSHVARLQILSMDGQKAIQIKHQDEINWLAGDVMHNLIFQMYDEGEREI
HITPALAEKIKVNWTPKINKEHLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTV
RPRPDEPKHIKCKLKGPNTLQIGEELQGEIDVVITDQYGNQIQTVTSACVNSLGISGPGL
DKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRINLTAGSPAKLQFVD
WPELEKPVSVINGRELQKPLIVQLCDQWGNPSPEPNVKISLTKSINLKIVPSNQQHKTDE
NGRANLGVISIHAPRGEHTLQLKASYNKTTLDCPIITFNVLPDPEKPVRLNVKYDKNPSF
PAGGTFTDFMVSVLSEDDNVIKNINPARISMKMWEGQSSGTGIPVDVTTFSCSKVKDDKE
DGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLNSDQIIVEVVPNDPVRLLPDPLPATPAV
SNVRTLTSRTLVKDLYLHVMDEYNNHTGIDLVGRIIAKIKSPNEDEDIEIPQFEGKVSTI
EFPFDKGSSEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQ
MATLTKERDQLSQSIGVYRNWFDTTNQLVNEMKCQVKEAETRETHMKNELKKHQIEIPQT
NKLQYVDSLIKQKKLDQERVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVIS
WHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKICFR
AIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTR
EGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIELLQQYRTAVVKLDNV
NKDLDLQLQSLNTPEMQKKKQELAEQEKSLMLIEQKLGMTPSDKVMESFQPMMLDMPDTP
IPPKRMRRETVKKLYSSEEWISSPSKKQQQQQQQQLLQITPSELNGPPRKRKA
NT seq
6102 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcagccgcggcggcaggcggccgcggggctcgcaggccgatgctgcctcgc
tgcagcggcgaccgcaccgtgtttctcttcgaccggcgcttggagcaggccgacccggac
gagaaagtgctcagctacggcaaggacaactaccgcggattccgcagcgccgtctgccag
gcatttggcatagctactgatgaaaactttgttatcaccacaacaagcaggaaggaaatt
acggaagataatttcagcgagcttgttcaagatggagttactttatatctgctacagtca
gttgatcaaatgctgcttttggcaaccaaggagcgaattgacttcctgccccactacgat
acacttgttaaaagtgggatgtacgagtactatgccagcgaagggcaaaatcctttgcca
tttgcccttgctgagttgattgacaattctctgtcagctacatcccgaaatactggtatt
cggagcatacagataaaattgttatttgatgactcccaaggaaaaccagccgttgctgtg
atcgataatggaagaggaatgacttctaaacagcttaacaactgggctgtatatagattg
tcaaagtttacaagacaaggtgactttgagagtgatcattcaggatatgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcaaattctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacagagaatcaata
tatagtggatacattcgaaacagaaagccatctgactctactcacatcacaagtgacgat
gaaagatttcttcatagtctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcatatgcagtacttgaaaaactactttcatctgtgg
acaagacagctggcacatatctatcactattacatccatggaccaaaaggaaatgaaact
aatgctgtaacaaaagatgtaagccctttcaacaacattgacatcgagatttcaatgttc
gaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcggatagttttgagtttaaggcacatgttgaaggagaaggt
atagtggaaggcatcatccgatatcatcccttcctgtatgataaagaaacataccctgat
gatccatgttttccatcaaaactaaacgatgatgatgatgatgactgctttatagtggaa
aagggggccagaggaaaacggcctatttttgaatgtttttggaatggaaggttaatacca
tacacaactgtagaagattttgactggtgcgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattatttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagttgaaagataagaatactctgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actacacgtactgatttaccatccaaaagaatgcagagcccttgggcaacgtatgctgca
atagagtgggatgggaaaacatacaaaactggccagctggtgaaaactgttaagactctt
ccaatattctatggaagtattgagaaattttttttgtatggagaccacgatggggatata
tttgccacaggaggagaggttcaaattgctttggaacctcaggcgttgtatggtgaaatg
aaagttattccaatctcaaaacttgacagaacagtgtctgaaaaagctgttaaaaaatac
atagaggatgaaatggcaagacttcctgacaaattatcggtaacgtggcctgaaggagat
gagttattaccaaatgaaacgagatttgctggtacaccaataggagcgttaagaatagaa
attttgaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattttacattcacctactgggaataaagaaata
atttctcatattagtcagcatggaggcaaatggccgtactggtttaaaaaaatggaaaat
cttcagaaacttgggaactacactttgaaactgcaagtagtattgaatgaaagtaatgca
gacacttacgcaggaaggcctctgccatctaaaatatttaaatttactattatagagggc
aaaccagagaaattttcagtgggtcttttggatcttccttttcgaattggagtacctttt
aatattcctttggaattacaggatgaatttggtcatgcaacacagttgacagctggcatt
aaaccaatccttgaagctagtggattgacattgcagtatggagaagtaactgcaggaaca
aagtgcatcatcaagggtgtcactgctaaaggctctataaatagttgccagggcaagaac
ttcaatctgaaggttactcttcctggtttgaaagaagacacacaaatctttaaaataaga
ttacagcctggccctcctcgtcaattgaaagtaaaaccagattctgaagtgctaaggatt
gaaaacggaacagctttcccctttcaggttgaagtgctggatgaatcgggaaatataaca
gcacagccaaagttggtagttcattgtaagtttttaggtgcttcaaaccttcctgtgtat
tctgtggactgcagtaatgcaggaacaaacattttaactggtccagttatacatgtacag
aatatcaagaaagaccagatgctgaaagcaaggattgaaatacttagttgtaaagatgtg
ccagcagtggaaaagatcattaaacttcttcctagcagtcatgttgcaagactacagatc
ttaagtatggacggacaaaaagctattcaaattaaacatcaggatgaaattaactggctt
gctggcgatgtcatgcacaaccttatatttcagatgtatgatgaaggagaaagggagata
cacataactccagctttggcagaaaaaatcaaggttaactggacacctaaaattaacaaa
gaacatttgattcagggattattacctgatgtcaaagtaccaacatcggtaaaagatgta
cgttactgtctaattacttatcttgatgaccatgtgtctttggagagtgcgttcacagtc
aggccacgtcctgatgaacccaagcacattaaatgtaaattgaaaggacccaacacactg
cagattggtgaagaactacaaggtgaaattgatgtagtgattacagatcagtatggaaat
cagattcagacagtgacatctgcatgtgtaaattcccttggaatttctgggcctggactt
gacaaatcaaatttgaaaataacttggcaggaaagtactctaacaatgagagtgaaaggt
attcgttttaaaccatgtttacttggaagcaaagaattgtgctttgcttggcgtgaattt
tctgactttctgagaataaacttaactgcaggatcccctgctaaattgcagtttgtggat
tggccagagttagaaaagcctgtttcagtaattaatggtagagaattgcagaagcccctt
attgttcagctgtgcgatcagtggggaaatccatctcctgaacctaatgtcaaaatcagc
cttacaaagagtatcaacttaaagattgtaccttcaaaccagcaacataaaacagatgaa
aatggtagggctaacctgggagttattagtattcatgcgcctaggggagagcacacttta
cagcttaaagcctcatacaacaagaccacattagattgtcctataatcacattcaatgtc
ctgcccgatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatccttctttt
ccagcaggaggtaccttcaccgattttatggttagtgttctttctgaagatgacaacgtt
attaaaaatattaatccagcacggatttccatgaaaatgtgggaaggacagagcagcgga
actgggataccagttgatgttacaacatttagctgtagtaaagtgaaggatgacaaagaa
gatggcttcttttacttcagggataaagttgttcctgagagagtgggcacttacagcatc
cagttcacctttgcaatggataagacaaatatgctcaacagtgaccagattatagttgaa
gttgtacctaatgaccctgtacgcttgttacctgatcctttaccagctactccagcagtt
tccaatgttcgaactcttactagccgtacactggtcaaggatttatacctccatgtaatg
gatgaatacaacaaccacactggaattgatctagttggcagaataatagcaaaaattaag
agccccaatgaagatgaagatatagagatcccgcagtttgaggggaaagtcagtacaatt
gagtttccgttcgacaaaggatcatctgaaattaatctagtgctggctgaaaacagtcct
ggaagagatagcactgaatatattcttgtatttgagccagatctgccagctttgaaaaaa
cctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacag
atggcaacgcttacaaaggagagagaccaattatctcagtccataggtgtttacagaaat
tggtttgatactactaatcagcttgtaaatgaaatgaaatgtcaggttaaagaagctgaa
acaagagaaactcacatgaagaatgaactgaaaaaacaccaaattgaaataccacagaca
aacaaacttcaatatgtggattctcttataaaacaaaagaagttggaccaagaaagagta
atgaaacagccaaggcgaacttgtaccctcccaaactatccaaaaggcaaccaggatatt
ttaggcaagattgcacatttagcacaaattgaggataacgaagcagcaaaagttatctct
tggcatttggcaagcgacatggactgtgtagtcacactgactactgaagccgctcgttct
atttttgatgaaacacaaggtcgacaacaggtgttaccccttgattctatttacaagaag
acactccctgattggaacaggcctttacctcacttaagaaatggaaaaatctgcttcaga
gctattggaaatcctgtatttgccagagatctgttaacttttccagataatgtagagcat
tgtcaaacagtgtttgggatgctcttgggtgacactatcattatagataacttggatgct
gccaaccattacagaaaagaggttgttaaaattacacattgccctactttgctgacgagg
gaaggagacaggattcgcagcaatgggaaatttggaggccttcagaataaagctcctcca
atggacaaactcagaggaatggtatttggagcacccatgccaaaactttactctactttc
tctggacagatagaacttcttcagcaataccgtacagcagtggtgaaacttgataatgtg
aataaggaccttgatttacagttgcagtcacttaacactccagaaatgcaaaagaaaaaa
caggaacttgccgaacaagagaagagcctcatgttaatagaacaaaaattgggtatgact
ccatcagataaagtcatggaatcatttcagcctatgatgttggatatgcctgacactccc
atccctcccaaaagaatgcgaagagaaacagtaaaaaaattgtatagctcagaagaatgg
atctcctctccctcaaagaagcagcagcaacagcagcaacagcaactgctgcaaataacc
ccttcagaacttaatggacctccacgaaagagaaaggcatag
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integrated database retrieval system
