Chroicocephalus ridibundus (black-headed gull): 134512944
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Entry
134512944 CDS
T10910
Symbol
RRP8
Name
(RefSeq) ribosomal RNA-processing protein 8 isoform X1
KO
K10260
F-box and WD-40 domain protein 7
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134512944 (RRP8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crid04131
]
134512944 (RRP8)
04121 Ubiquitin system [BR:
crid04121
]
134512944 (RRP8)
Membrane trafficking [BR:
crid04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
134512944 (RRP8)
Ubiquitin system [BR:
crid04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134512944 (RRP8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltransf_8
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
F-box-like
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
F-box
Beta-prop_DCAF4
Methyltransf_11
Beta-prop_RIG_1st
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Methyltransf_25
Methyltransf_31
Beta-prop_IFT140_2nd
Beta-prop_VPS8
Beta-prop_IFT140_1st
PQQ_2
WD40_RFWD3
Ge1_WD40
Beta-prop_NWD2_C
Anamorsin_N
Beta-prop_IP5PC_F
Methyltransf_12
KNTC1_N
PALB2_WD40
eIF3h_C
Ubie_methyltran
Methyltransf_23
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
134512944
NCBI-ProteinID:
XP_063184938
LinkDB
All DBs
Position
1:complement(12303452..12323555)
Genome browser
AA seq
1018 aa
AA seq
DB search
MFAEEKWDDGAEGPGRPGSPGKRRRRPEQCAAKPGQDGEPARKRPRGRRRSGQRPDTDAA
AQRPPPSAEPGAAGPGPGEAARGLSGRRRRRQQKKKDRQQKKDRQQKDRQQKGEPPAGPG
GERDPEPPVAEPAPSGRSAALRARMEARLVSARFRYINQQLYTSTSREAARLFRSDPEAF
HIYHRGFARQVERWPQNPLHRIVRYLRRRPATLVVADFGCGDCTLANSVRNKVHCFDLVP
LSPLVTVCDMAKVPLAAESVDVAVFCLALMGTNLQEILEEANRVLKPGGTLMVAEVASRF
EDIRAFMSAMAQLGFKSVSKELKGFNSLDDLLHVKGITTRILELNSQRMTCRRRPSSEEA
ARVSPTLQGDGKAPVPQVVAEEEEEVSGPWEPERSGKGSPGPGLEADGSRGPGAQEPVRS
TVCGEQEEEEEEEEEEGSCYSEEGEDGSNVYFYYTIGERWIDYLQRTEDGGLLRHVRPKM
KRKSENGLDGRALSPGKKLCKGSEYSRTLGPCMPSPTTTFGDLRNAKAGQARRRRIPSVA
PPPELQDWLRTFQRWSGPEKLLALDELIDRCEPSQIKYMMQVIEPQFQRDFISLLPKELA
LYVLSFLEPRDLLRAAQTCRYWRVLAEDNLLWREKCREEGIEEPLNLRKRRLLSPGFMYS
PWKFAFMRQHKIDMNWRSGELKAPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV
TGECVQTLVGHTGGVWSSQMRDSIVISGSTDRTLKVWNADTGECVHTLYGHTSTVRCMHL
HGNRVVSGSRDATLRLWDIETGQCLHVLMGHVAAVRCVQYDGHKVVSGAYDYTVKVWDPE
SESCTHTLQGHTNRVYSLQFDGTHIVSGSLDTSIRVWDVESGNCLHTLMGHQSLTSGMEL
RDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFSSKFVVTSSDDGTVKLW
DLKTGEFVRNLVALESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDLK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccgaggagaagtgggacgatggggcggagggcccgggccggccgggttccccg
gggaagcggcggcggcggccggagcagtgcgcggccaagcccggccaggacggggagccc
gcgcggaagcggccccgggggcggcggcggagcgggcaacgcccggacacagacgcggcg
gcccagcggcccccgccgagcgcggagcccggtgcggcggggccggggccgggggaggcg
gcgcggggtctgagcgggcggcggcggcggcggcagcagaagaagaaggaccggcagcag
aagaaggaccggcagcagaaggaccggcagcagaagggcgagcccccggcggggcccggc
ggggagcgggacccggagccgcccgtcgcggagccggcgccgtcggggcggtcggcggcg
ctgcgggctcggatggaggcgcggttggtgtcggcccggttccggtacatcaaccagcag
ctctacacctccaccagccgggaggccgcccggctcttccgcagcgatcccgaagccttc
cacatctaccaccgcggcttcgcccggcaggtggagcgctggccccagaaccccctgcac
cgcatcgtccgctacctgcgccgccggccggccacgctggtggtggcggatttcgggtgc
ggagactgcacgctggccaacagcgtccgcaacaaggttcactgcttcgacctggtgccg
ctcagccccctggtcaccgtctgcgacatggccaaggtgccgctggcggccgagtcggtg
gacgtggcagtgttctgcctggcgctgatgggcaccaacctgcaggagatcctggaggag
gccaaccgcgtgctgaagccggggggtaccctgatggtggctgaggtggccagccgcttc
gaggacatccgggccttcatgagcgccatggctcagctgggcttcaagagcgtctccaag
gaactgaagggtttcaactcgctcgatgatctcctccacgtcaaaggcatcaccacccgc
atcctggagctgaacagccagcggatgacttgcaggaggcggccgagcagtgaggaagct
gcgagggtgagccccactctgcagggggacggtaaagcccctgtgcctcaggtggtggcc
gaggaggaggaggaggtttcggggccctgggagccggagcgctctgggaaggggagccca
ggaccgggactggaggctgatggctccagagggccgggagcacaggagcccgtcaggtcc
accgtctgcggggagcaggaggaggaggaggaagaggaagaggaagaggggagctgctac
agcgaggaaggggaggacggcagcaacgtctacttctactacaccatcggggagcgctgg
atagactacctgcagcggacagaggatggtggcctcctccgccacgtgcggcccaagatg
aagcggaagtcggagaacggcctggatggcagggccctttcccccggcaagaagctgtgc
aagggctccgagtacagcaggacgctgggtccctgcatgcccagtcccaccaccaccttc
ggggacctgcgtaacgccaaagcgggccaggcgcgccgccgccgcatcccctcggtggcg
cctcctcccgagctgcaggactggctccgcaccttccagcgatggagcggcccggagaag
ctgcttgctctggacgagctcattgaccgctgcgagccctcccagatcaagtacatgatg
caggtcatcgagccccagttccagagagacttcatttccctgctgcccaaggagctggca
ctctacgtcctgtccttcctggagcctcgggacctgctccgtgctgcccagacctgtcgc
tactggagggtcttggctgaagacaacctgctttggagagagaagtgccgtgaagaaggc
atcgaggagcccttgaacctgcggaagcggcgcctgctgagccccggattcatgtacagc
ccctggaaatttgccttcatgcggcagcacaaaatcgacatgaactggcgcagcggggag
ctaaaagcccccaaggtgctgaagggacacgatgaccacgttatcacctgcctgcagttc
tgtggcaaccgcatcgtcagcggctcggacgacaacacgctcaaagtgtggtccgccgtc
acgggggagtgcgtgcagacgctggttggccacaccgggggcgtgtggtcttcccagatg
cgggacagcatcgtcatcagcggctccacggaccggacgctcaaagtttggaacgcagac
acgggggaatgcgtgcacacgctgtacgggcacacgtccaccgtgcgctgcatgcacttg
cacgggaacagggttgtgagcggctcacgggacgccactctgcgtctctgggacatcgag
actgggcaatgcctgcacgtgctgatggggcacgtggccgccgtgcgctgcgtgcagtac
gacgggcataaggtggtgagcggcgcttacgactacaccgtcaaagtgtgggaccccgag
agcgagagctgcactcacacgctgcagggacacaccaaccgcgtctactccttgcagttt
gacgggacgcacatcgtcagcggctctctggacacctccatccgagtgtgggacgtggag
agtgggaactgcctccacaccctgatggggcaccagtcgctcaccagtggcatggagtta
cgtgacaacatccttgtgtctggcaacgctgactccacagtcaagatctgggacatcaag
acgggccagtgcctgcaaacgctgcaggggcccagcaagcaccagagtgccgtcacctgc
ctgcagttcagctccaagttcgtggtgaccagctcggacgatggcaccgtcaagctctgg
gacctcaagacgggcgagttcgtgcgcaacctggttgcgctggagagcgggggcagcggg
ggcgtggtgtggcgcatccgcgcttccaacaccaaactggtgtgtgccgtgggcagccgc
aacggcaccgaggagaccaagctgctggtgctggactttgacgtggacctgaaatga
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