Chroicocephalus ridibundus (black-headed gull): 134514171
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Entry
134514171 CDS
T10910
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134514171 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crid03000
]
134514171 (KDM2A)
04121 Ubiquitin system [BR:
crid04121
]
134514171 (KDM2A)
03036 Chromosome and associated proteins [BR:
crid03036
]
134514171 (KDM2A)
Enzymes [BR:
crid01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134514171 (KDM2A)
Transcription factors [BR:
crid03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134514171 (KDM2A)
Ubiquitin system [BR:
crid04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134514171 (KDM2A)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134514171 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134514171 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
134514171
NCBI-ProteinID:
XP_063187650
LinkDB
All DBs
Position
4:complement(2460125..2512296)
Genome browser
AA seq
1242 aa
AA seq
DB search
MAAAAPVRGQRRRRDLEEEEEDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRMVDVMDVNTQRDIEMSMAQWARYYETPEAEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEEED
DAAGKEPRRPVTRRSILTSPIANGANVDYDELGKSCRSSLPGLKKTPSIDSSDSSRGSQN
GQAWDPNGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGIPIVQWPKRDKLKLQARLRVRLPTIPITKPHTMKPTPRPTPVRP
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDAEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSTNLQHSPRVVMRHAPARMPLRGGGEEEAA
AEEDEEEEEEEDENAEEGGAARLNGRGGRAQEGEESWMQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSKLLA
RLGRQGVGGERRGDCRIRNTRTLSFSSPFAGQDNRSKLRNMIDFRLAGLDITDATLRLII
RHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNSLTELNMAGCNKLTDQALLYLRRISN
VTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctcctgtaagaggacaaaggcgcaggagagacctggaggaagaggag
gaagacagcagtcctggagtgtccttctcactctcttcagaagagtcggagatggagccc
gaggaagaaaggatccgttacagccaaagactgcgtggcacgatgaggcggcgttacgag
gacgatggcatctccgacgatgaaatcgaagggaagaggacgtttgacctcgaggaaaag
ctgtccaccaacaagtttaactccaccttcgtggtcttcatggaaggcaaagacttcaca
gttgaatacatccagcggggcggcctgagggaccctctcatcttcaggagctcggatggc
ctggggataaagatgccagatccggacttcagcgtgaatgatgtgcggctgtgcgtcggg
agccgacggatggtggatgtcatggatgtgaacacgcagagggatatcgagatgtccatg
gcgcagtgggcacgctactatgagacaccggaggccgagcgagagaaactttacaatgtc
atcagcctggagttcagccacaccaaactggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccagacacctgaaggagagtcagacagag
tctacgaatgctatcctggagatgcagtacccaaaggtgcagaaatactgtctgatgagt
gtcaagggctgctacacagatttccacgtggactttggtggcacttctgtgtggtatcac
atccaccgagggggaaagatcttctggctgatccctcctacaccccagaacctggagctc
tatgaaaactggcttctctcagggaagcagggagacattttccttggggacagagtgtca
gagtgccagcgcatcgagctcaagcagggctacacgtttgtcatcccctcaggttggatc
catgccgtgtacactcccatggacacgctggttttcggaggcaacttcttacacagcttc
aacatccctatgcagctccggatctacagcatcgaagaccgcacgcgggtcccaaataag
tttcgttatcccttctattacgagatgtgttggtacgtgctggagcgctatgtctactgc
atcaccagccgctcgcatctgaccaaggacttccagaaggaatcgctcagtatggatatg
gagctgagctcctcggactcggtaaacatggaggaggaggaggaggaggaagaagaggat
gacgcagcagggaaggaacccaggcgaccggtcacaaggcggtccattctcaccagccca
atagccaacggtgccaatgtggactatgatgaactgggcaagagctgccggagcagcctg
ccaggtctgaagaagaccccatctatagactcttccgactccagccggggctcccaaaac
ggccaggcctgggaccccaatggtggcagcccgcgcaagagcaggaaggtccacctgacg
cagtttgagctggaggggctgcgctgcctcgtggacaaactggagtcgctccctctgcac
aagaagtgcgttcccaccggcatcgaggatgaggacgccctcatcgctgacgtcaagctg
ctgctagaagaatacgcgaacagcgaccccaaactggcacttacaggcatccccatcgtc
cagtggcccaagagagataagctaaagctccaggcccggctgagggtgcgcctgcccacc
atccccatcaccaagcctcacaccatgaagccaacccctcgcccgacacccgtcaggcct
acggtctctcccatcgtgtcaggcgccaggcggaggcgggtgcggtgccgaaaatgcaag
gcttgcatgcagggcgagtgtggcatgtgccactattgcagggacatgaagaagtttggt
gggcctggccgcatgaagcagtcctgcgtcctccggcaatgcttagcgcccaggctgcct
cactcggtcacgtgtgcactttgcggggaggtggatcagaacgaagactcgcaggacttt
gagaagaagctcatggagtgctgtatctgcaacgagattgttcaccctggctgcctgcag
atggatggggaagggctgctcaacgacgagctccccaactgctgggagtgccccaaatgc
taccagggtgacgacgcagagaagggccagaaacggaaggtggaggagagcgacgacgac
acggcgcaagccaaggtgctgcggcccctgcggagttgcgaggagcccctgacccccccg
cccaactcgcccacccccatgctgcagctgatccacgacccagcgtcaccgcgaggtgtg
gtgacgcgctcgtccccgggagccggccccagcgaccaccacagcgccagcagagacgag
cgcttcaagcgacggcagctgctgcggctccaggccaccgagcgaaccatggtgcgggag
aaggagaacaaccccagcggcaagaaggagctgtcggaggtggagaaggccaagctccac
ggctcctacctcaccgtgacgcttcaacgccccaccaaagacgtccacggcacttctatc
gtccccaagctgcaagccatcacggcctcctccaccaacctgcagcactccccccgcgtg
gtcatgcgccatgcgcctgccaggatgcccctgcggggcggcggggaggaggaggcggcc
gccgaggaggatgaggaggaagaggaggaggaggacgagaacgcggaggaggggggggcg
gcccggctaaacggccgagggggccgggcgcaggagggcgaggagagctggatgcaacgc
gaggtgtggatgtccgtcttccgctacctcactcgcagggagctctgcgagtgcatgcgg
gtgtgcaagacctggtacaagtggtgctgtgacaagagattgtggacgaagatagattta
agcaggtgcaagtccatcaccccccaggcgttgagcggcatcatcaaaagacagccggtc
agccttgacctcagctggaccaatatctccaaaaaacagctaacgtggctcgtcaacagg
ctgccaggtttgaaagacctcatcttagcgggctgttcctggtctgcggtctgtgctctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttactcacgcctccaacagacaaacccagtaagctgttggcc
aggctggggcggcagggagtcggaggagagcggcgaggcgattgccggatccggaatacc
cggacgctcagcttctcctctccctttgcaggtcaggacaatcgcagcaaactccgcaac
atgatcgatttccggctcgccggcctggacatcaccgacgccacgctgcggctgatcatc
cgccatatgcccttgctctcccgcctcgacctcagccactgcaaccaccttacggaccag
tcggccaacctcctcacggccgtgggctcctccacgcgcaactccctcaccgagctcaac
atggcaggctgcaataagctgacggaccaggccttgctgtacctgcgccgcatctccaac
gtcaccctcatcgacctgcgaggttgcaaacagatcacccgcaaagcctgtgagcacttc
atctcggacctgtccatcaacagcctctactgcctgtccgatgagaagctgatccaaaaa
atcagctag
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