KEGG   Chroicocephalus ridibundus (black-headed gull): 134516809
Entry
134516809         CDS       T10910                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:crid00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    134516809 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:crid03400]
    134516809 (LIG4)
Enzymes [BR:crid01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     134516809 (LIG4)
DNA repair and recombination proteins [BR:crid03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     134516809 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT DNA_ligase_A_C BRCT_2 RNA_ligase LIG3_BRCT mRNA_cap_enzyme Tox-REase-9
Other DBs
NCBI-GeneID: 134516809
NCBI-ProteinID: XP_063193495
LinkDB
Position
1:complement(65677418..65681643)
AA seq 912 aa
MASAPASQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIASNNTAKNKGMLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKNNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVAGRIHVVQKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHTICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTISKVKRIIGIAEQFKAPDLSTVNKV
SNVFEDVEFCVMTGMGKYSKSYLESRIAEYGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMEDSKLVPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGVSHVIIGEDHSRVKEIKALRRTFGKKFKIVSELWVKQSVE
EGVPKDENQYLV
NT seq 2739 nt   +upstreamnt  +downstreamnt
atggcttccgcaccggcttcacaaccttctccaaaaaagacagtggcctctcacgtgccc
tttgcggatctgtgttctactctggagcgaatccagacgtgtaagtctcgtccggagaaa
accaagtatttcaaggatttcctggattcctggagaaaattccatgatgcgcttcatcag
aaagagaaagacgtcacggattctttttatccagctatgcgacttattcttccacagctg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttgccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaacgaacacttagatgcaata
gctagtaataatactgcgaaaaacaagggaatgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaagtggctcatccgcatgattataaaggatctaaag
cttggtgttagtcaacaaacgatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccgatgcttgctgctattgctgat
gtccagcaaattgagaagcaaatgaataaccaggtattctacatagaaactaagctggat
ggtgagcgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggttcattaacgccatttatt
cataacgtatttaagaacaatatacaaaactgcattcttgatggtgaaatgatggcttac
aatcctgagactcaaacctttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgttcgatgtattgatggttaacgatcag
aagttgggtcatgaagtactaagcaaaagatatgaaatcttaagtagcgtatttacccca
gtagcaggcaggatccatgttgtacagaaaaaaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaagaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgaggggaaggctggttaaaaatcaagccagaatatgtc
aatgggctaatggatgaactagaccttttaattgttggcggttactgggggaagggctca
cgtggtggaatgatgtctcattttctgtgtgcgattgcagagacgccccctccaaatgaa
aaacctaccgttttccacactatttgtcgtgttggctctggctatactatgaaggaattg
tatgatctaggtttgaaactggctaaacactggaagccatacaataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaaccagaaatgtacattgaaccttgcaactctgtc
atagtccagatcaaggcagccgagattgtgaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagagtggtacgagtgcatgact
tcagacatgttagaagatctccgaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactatatcaaaggtgaag
aggataattggaatagctgagcagtttaaagctcctgatctttctactgtaaacaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tcgtacctggaaagcagaatagccgaatatggtggcagtgtggtacagaacccggggcca
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaatggaagacagtaagttggtacctttggatgtgattgcagagtta
gaagaacgttattcatggaacagctgtcagctcagtatattcagaggaaacactatttat
gtggactgttacgctgttgtcaatgagcccagaaccaaaatccatggaacaacactatcg
attagagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggt
gtctcccatgttattataggagaagatcattcccgggtaaaagagattaaagcactcagg
agaacatttgggaaaaaatttaaaatcgtatctgagctgtgggtaaaacaatcagtggag
gaaggagtcccgaaggatgaaaatcagtacttagtttaa

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