Chroicocephalus ridibundus (black-headed gull): 134516809
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Entry
134516809 CDS
T10910
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134516809 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crid03400
]
134516809 (LIG4)
Enzymes [BR:
crid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134516809 (LIG4)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134516809 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
134516809
NCBI-ProteinID:
XP_063193495
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All DBs
Position
1:complement(65677418..65681643)
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AA seq
912 aa
AA seq
DB search
MASAPASQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIASNNTAKNKGMLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKNNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVAGRIHVVQKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHTICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTISKVKRIIGIAEQFKAPDLSTVNKV
SNVFEDVEFCVMTGMGKYSKSYLESRIAEYGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMEDSKLVPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGVSHVIIGEDHSRVKEIKALRRTFGKKFKIVSELWVKQSVE
EGVPKDENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcaccggcttcacaaccttctccaaaaaagacagtggcctctcacgtgccc
tttgcggatctgtgttctactctggagcgaatccagacgtgtaagtctcgtccggagaaa
accaagtatttcaaggatttcctggattcctggagaaaattccatgatgcgcttcatcag
aaagagaaagacgtcacggattctttttatccagctatgcgacttattcttccacagctg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttgccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaacgaacacttagatgcaata
gctagtaataatactgcgaaaaacaagggaatgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaagtggctcatccgcatgattataaaggatctaaag
cttggtgttagtcaacaaacgatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccgatgcttgctgctattgctgat
gtccagcaaattgagaagcaaatgaataaccaggtattctacatagaaactaagctggat
ggtgagcgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggttcattaacgccatttatt
cataacgtatttaagaacaatatacaaaactgcattcttgatggtgaaatgatggcttac
aatcctgagactcaaacctttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgttcgatgtattgatggttaacgatcag
aagttgggtcatgaagtactaagcaaaagatatgaaatcttaagtagcgtatttacccca
gtagcaggcaggatccatgttgtacagaaaaaaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaagaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgaggggaaggctggttaaaaatcaagccagaatatgtc
aatgggctaatggatgaactagaccttttaattgttggcggttactgggggaagggctca
cgtggtggaatgatgtctcattttctgtgtgcgattgcagagacgccccctccaaatgaa
aaacctaccgttttccacactatttgtcgtgttggctctggctatactatgaaggaattg
tatgatctaggtttgaaactggctaaacactggaagccatacaataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaaccagaaatgtacattgaaccttgcaactctgtc
atagtccagatcaaggcagccgagattgtgaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagagtggtacgagtgcatgact
tcagacatgttagaagatctccgaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactatatcaaaggtgaag
aggataattggaatagctgagcagtttaaagctcctgatctttctactgtaaacaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tcgtacctggaaagcagaatagccgaatatggtggcagtgtggtacagaacccggggcca
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaatggaagacagtaagttggtacctttggatgtgattgcagagtta
gaagaacgttattcatggaacagctgtcagctcagtatattcagaggaaacactatttat
gtggactgttacgctgttgtcaatgagcccagaaccaaaatccatggaacaacactatcg
attagagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggt
gtctcccatgttattataggagaagatcattcccgggtaaaagagattaaagcactcagg
agaacatttgggaaaaaatttaaaatcgtatctgagctgtgggtaaaacaatcagtggag
gaaggagtcccgaaggatgaaaatcagtacttagtttaa
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