KEGG   Chroicocephalus ridibundus (black-headed gull): 134519992
Entry
134519992         CDS       T10910                                 
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
  KO
K05695  receptor-type tyrosine-protein phosphatase F [EC:3.1.3.48]
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04514  Cell adhesion molecules
crid04520  Adherens junction
crid04910  Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    134519992 (PTPRF)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    134519992 (PTPRF)
 09150 Organismal Systems
  09152 Endocrine system
   04910 Insulin signaling pathway
    134519992 (PTPRF)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:crid01009]
    134519992 (PTPRF)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:crid04515]
    134519992 (PTPRF)
Enzymes [BR:crid01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.48  protein-tyrosine-phosphatase
     134519992 (PTPRF)
Protein phosphatases and associated proteins [BR:crid01009]
 Protein tyrosine phosphatases (PTPs)
  Class I PTPs (Classical)
   Receptor PTPs
    134519992 (PTPRF)
Cell adhesion molecules [BR:crid04515]
 Immunoglobulin superfamily
  Type II RPTP family
   134519992 (PTPRF)
SSDB
Motif
Pfam: Y_phosphatase fn3 I-set Ig_3 Ig_DSCAM-DSCAML_C Pur_ac_phosph_N Ig_2 ig fn3_2 Interfer-bind PTP-SAK Tc-R-P DSPc V-set Y_phosphatase3 C2-set_2 PTPlike_phytase PTP-NADK Ig_C17orf99 Y_Y_Y Fn3_PTPRU Insulin_TMD DUF3377 TMEM154 ICAM_N
Other DBs
NCBI-GeneID: 134519992
NCBI-ProteinID: XP_063200905
LinkDB
Position
8:complement(12513577..12910570)
AA seq 1918 aa
MVPNFCVPVLTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGGTPIRGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSI
PPSNHEVMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIVQSANY
TCVAISSLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKA
KSLEGQFQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSP
PLKVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVG
SLITGTTYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPAS
QERITKYELLYWEGEDGTQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPTI
EARTAQSTPSAPPQEVECVSTSSTTIRVSWVPPPAQSRNGVITQYSIAYQAVEGDDNTKH
VVDGIGREHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEV
ESVNSTAIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIKDVMLSEAQWRAEDS
VDHETVIGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTAL
IQWHPPKEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYVFKLSAKNR
AGPGEEFEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWDPPVLAERNGKIVNYTVVYRD
INSQQDLVNITKDTSITLTNLKPDTTYDIKVRARTNKGVGPLSPSIQSRTMPVEQVFAKN
FRVNAVMKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVL
MNRGSSAGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKVQTTVPVRWYYIVVV
PADQSTSSPTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFT
LGDEKNYKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPE
MLWVMGPVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSLLAHSSDPVEMRRLN
YQTPGASVPSCPNISSMRDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQFTWEN
SNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPE
TLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTLLDTVELATYT
VRTFALYKNGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPMVVHCS
AGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAAT
CGNTEVPARNLFAHIQKLTQVPPGESVTAMELEFKLLANSKAHTSRFISANLPCNKFKNR
LVNIMPYELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWE
HNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARD
GQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF
ITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq 5757 nt   +upstreamnt  +downstreamnt
atggtgcctaacttctgcgtcccagtactcactgtgccagcagccatcctctgctgcttg
atgctgcctttagcaggagcagacagcaagccaacgtttatgaaagctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacatggatgaagaaggggaagaaagtcagttctcagcggtttgaggttattgag
tttgatgatggatcaggatcagttctgcggatacagcccctgcgtgttcatcgagatgaa
gctatctatgagtgcacagcaaccaatagtgttggggagataaacacgagtgccaaatta
acagtgttagaagaagaccacctcccagctggcttcccgaccattgacatgggtccgcag
ctaaaggtggtggaaaaggctcgcacagccacaatgctctgtgctgccagcggtaaccct
gatcctgaaatctcctggtttaaggacttcctgcctgttgacactgcaactagcaatggg
cgaatcaagcagctccgctcgggtggtacaccgatcagaggagctctgcaaatagagaac
agcgaggagtcagaccaaggcaaatatgaatgtgttgcaaccaacagcgcaggaacccgc
tactctgccccagcgaacctttatgttcgagtgcggcgtgttgctcctcgattctctatc
cctccgagcaaccacgaggtgatgccaggggggagcgtgaacctcacatgcgtggcagta
ggtgctccgatgccctacgtgaagtggatggctggtgtggaggaactgaccaaagaagat
gagatgcccgttggtaggaacgtcctggagctgaataacatcgtgcagtctgccaactac
acctgcgtggccatctcttctctcggcatgatcgaagccacagcccagatcactgtcaaa
gcactgccaaaacctccaacagagccattagtgactgaaacgacagctaccagcgtgacc
ctcacctgggattcgggcaactccgaccccatttcatattacgtcatccagtacaaggcc
aaatccttggagggtcagttccaggaggtggatggtgtggcaacaacccgctatagcata
ggtgggctcagccccttctcggagtatgagttccgggtcattgcagtcaataatattggc
aggggtccccccagtgagctggtcgaggcccggacaggagagcaagctccttcaagccca
cccctcaaagtccaagcacggatgctgagcgccagcaccatgctggtccagtgggagcag
ccagaggagccaaatggacagatcagagggtaccgcgtttactataccaccgacccacat
ctgcctttgagcatgtggcagaaacacaacaccgacgacagccatctcaccaccgtgggg
agcctcatcacagggaccacgtacagcatccgcgtcctggcctttacttcggtgggcgac
gggcccccctcggacatcatccaggtcaaaacacagcaaggggttcctgcccagccagct
gacttccaggcagaagcagagtctgatacccgcatcctgttgacgtggctgccagcctct
caggaacgcattaccaaatacgagctgctgtactgggaaggggaggatggcactcagcaa
aaggtggagtttgacccaacatcctcgtatgctgtggaaggtctcaaaccagacacgctg
tataagttccgtctgggtgcccgctcagagctgggggtaggagtctacacccccacaatc
gaagccagaactgcccaatccaccccctccgccccaccccaagaagtcgagtgtgtaagc
accagctccactaccatccgggtaagttgggtgccaccgcctgcccagagccgcaatggg
gtcatcacccagtactccattgcataccaggcagtggaaggagatgacaacaccaagcat
gtggtggatggcattggacgtgagcactccagctgggagatcaaggacctggagaaatgg
accgagtacaaggtgtgggtaagggctcacaccgatgtggggccaggaccggagagcatc
cccgtgcatgtgcgcacggatgaggatgtgcccagtgccccaccacgaaaggtggaggta
gagtctgtgaattcaacggccatccgggtgagctggaagctgcccatctccaacaagcag
catgggcagatccgtgggtaccaggttacgtacgtgaagctggaaaacaacgagccccga
gggcagccagtgatcaaggacgtcatgctgtcagaagcacagtggagagctgaggactcc
gtggaccatgagacggtgataggaggcctgctgccggaaaccacctactcggtcacggtc
gctgcctacaccaccaaaggagatggtgcccgcagcaagccaaaagtcatcaccaccaca
ggggcagtcccggggaagcccaccatgatgattagcacgacagccatgaacacagccctc
atccagtggcacccacccaaggagatggtaggggagctgctgggttaccggctgcagtac
agacgtcttgatgaggaaaagatgaacacgatagacttcgggaagagagaccatcactac
actgtgaccaacctgcacaagggggccacatacgtcttcaaattgtctgccaagaacaga
gctggcccgggagaggagtttgagaaggagatcactactgcagaagatgtgccaagtggc
ttcccacagaacctgcgtgtggtgggtctcaccacttccaccacagaagttgcatgggac
cccccggtcttggcagaaagaaacggcaagatcgtcaactacacagtggtatacagggac
ataaatagccagcaggacctggttaacatcaccaaggacacaagtatcactttgacgaat
ttgaagcccgatactacttacgacatcaaagtgagggcccgcaccaataaaggggttggg
ccgctcagccccagcatccagtcccggaccatgcctgttgagcaagtgtttgctaagaac
ttccgcgtcaatgccgtcatgaaaacgtctgtgctgctgagctgggaagtgcctgactcc
tataaatctgcagtgccttttaagattctgtacaatagccagagtgtggaggtggacggc
cactcgatgaagaaactcataagtgacctccagccagacacggactattcttttgtgcta
atgaatcgcgggagcagtgctggggggctccagcacctcgtctcaatccgaaccgctcct
gacgtcttgcagagcaaacccatcgccacaaacaagtacatacaggaaggaaaattcacg
ctcacccttcccaaagtccagaccactgtgccagttaggtggtactacatcgtggttgtg
ccagcggatcagagcaccagcagcccaactgctcggtggcggacacctgatgagatggag
ctggaccagctgctggaggccataagccaagggagtcagagcaggcgccagcgacgccag
gcagacagactcaagccctacattgctgctcaagtggatgtgctgcctgagaccttcact
ctgggggacgagaagaactacaaaggtttctacaacaagcccctgtctcaagacctgagc
tatcgctgcttcgtgctggcctcgctggaggatggagacacgaagagatatgcagcgagc
ccctactcggatgagatcgtgatggaagtggcttcagcaaagcagcaggatgaaccggag
atgctgtgggtgatgggacctgtcctggccgtgatattaatcatcatcattgtcattgct
atactcctcttcaaaaggaaaagggcgcactccccctcttccaaggatgagcactccatc
ggtctgaaggactcgctcttggcccactcctctgacccggttgagatgaggcggctcaac
taccagactccaggtgccagtgtccccagttgcccgaatatctcaagcatgcgtgaccac
ccccccatccccgtgacggacctcgccgataacatcgacaggctgaaagccaacgacggg
ctgaagttctcccaggagtacgagtccattgatccagggcagcagttcacctgggagaac
tccaacctggaagtgaataaaccaaaaaaccgctatgcaaatgtgatcgcctacgaccac
tcacgcgtcatcctgacctccatcgatggggtcccaggcagtgattacatcaatgccaat
tacattgatgggtatcggaagcagaatgcctacatcgccacgcagggacctctgccagaa
actctcagcgacttctggaggatggtgtgggaacagagaacagcaactatagtcatgatg
accaggctggaggagaagtccagggtaaaatgtgaccagtactggccaagccggggtaca
gaaacctatgggatgatccaggtgaccctgttggacacagtcgagctggcaacctacacc
gtccgcacctttgcactgtacaagaacggctccagtgagaagcgagagctacgacagttc
cagttcatggcctggcccgatcacggcgtgccagaataccccaccccgatcctcgctttc
ttgcgacgggtcaaggcctgtaacccaccggatgctgggcccatggttgtccattgcagt
gccggcgtgggacgaactggttgtttcattgtcattgatgccatgctggagcggatgaag
catgagaagacggtggacatctacggccacgtgacgtgcatgcgctctcagcgcaactac
atggtgcagacggaggaccagtacatcttcatccacgaggccttgctggaggcagccacg
tgtggcaataccgaggtgcctgcacgcaacctcttcgctcacatccagaagctgacccag
gtgccaccaggcgagagcgttactgcaatggagctggaattcaagctgctggccaactct
aaagcacatacctcacgtttcatcagtgccaacctcccgtgcaacaaattcaagaatcgc
ctcgtcaacatcatgccatatgagctgacaagagtctgtctgcagcccatccggggtgtc
gagggctccgattacatcaatgccagcttcatagatgggtacaggcagcagaaggcctac
atcgccacccagggaccgctggccgagaccacagaggatttctggcggatgctctgggag
cacaactccaccatcgtggtgatgttgacaaagctgcgcgagatgggccgggagaagtgc
catcagtactggcccgcagagcgctctgcccggtaccagtacttcgtggtggaccccatg
gcagagtacaacatgccgcagtacatcctccgggagttcaaggtgacagatgccagggac
ggccagtcacggaccatccgccagttccagttcacagactggcctgagcagggagtgcca
aagacaggagagggcttcatcgacttcattgggcaggtgcacaagaccaaggagcagttc
ggacaggatgggcccatcacggtgcactgcagtgctggggtcgggcgcacaggcgtgttt
atcacgctcagtatcgtgctggagaggatgcgctacgagggggtggtggacatgttccag
acggtgaagaccttgcggacgcagcgaccagccatggtgcagacagaggaccagtaccag
ctgtgctacagagcggcactggagtatctcggcagcttcgaccactatgcaacgtaa

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