Chroicocephalus ridibundus (black-headed gull): 134519992
Help
Entry
134519992 CDS
T10910
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04514
Cell adhesion molecules
crid04520
Adherens junction
crid04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
134519992 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
134519992 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
134519992 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crid01009
]
134519992 (PTPRF)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
crid04515
]
134519992 (PTPRF)
Enzymes [BR:
crid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
134519992 (PTPRF)
Protein phosphatases and associated proteins [BR:
crid01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
134519992 (PTPRF)
Cell adhesion molecules [BR:
crid04515
]
Immunoglobulin superfamily
Type II RPTP family
134519992 (PTPRF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
DSPc
V-set
Y_phosphatase3
C2-set_2
PTPlike_phytase
PTP-NADK
Ig_C17orf99
Y_Y_Y
Fn3_PTPRU
Insulin_TMD
DUF3377
TMEM154
ICAM_N
Motif
Other DBs
NCBI-GeneID:
134519992
NCBI-ProteinID:
XP_063200905
LinkDB
All DBs
Position
8:complement(12513577..12910570)
Genome browser
AA seq
1918 aa
AA seq
DB search
MVPNFCVPVLTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGGTPIRGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSI
PPSNHEVMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIVQSANY
TCVAISSLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKA
KSLEGQFQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSP
PLKVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVG
SLITGTTYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPAS
QERITKYELLYWEGEDGTQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPTI
EARTAQSTPSAPPQEVECVSTSSTTIRVSWVPPPAQSRNGVITQYSIAYQAVEGDDNTKH
VVDGIGREHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEV
ESVNSTAIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIKDVMLSEAQWRAEDS
VDHETVIGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTAL
IQWHPPKEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYVFKLSAKNR
AGPGEEFEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWDPPVLAERNGKIVNYTVVYRD
INSQQDLVNITKDTSITLTNLKPDTTYDIKVRARTNKGVGPLSPSIQSRTMPVEQVFAKN
FRVNAVMKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVL
MNRGSSAGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKVQTTVPVRWYYIVVV
PADQSTSSPTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFT
LGDEKNYKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPE
MLWVMGPVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSLLAHSSDPVEMRRLN
YQTPGASVPSCPNISSMRDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQFTWEN
SNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPE
TLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTLLDTVELATYT
VRTFALYKNGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPMVVHCS
AGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAAT
CGNTEVPARNLFAHIQKLTQVPPGESVTAMELEFKLLANSKAHTSRFISANLPCNKFKNR
LVNIMPYELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWE
HNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARD
GQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF
ITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgcgtcccagtactcactgtgccagcagccatcctctgctgcttg
atgctgcctttagcaggagcagacagcaagccaacgtttatgaaagctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacatggatgaagaaggggaagaaagtcagttctcagcggtttgaggttattgag
tttgatgatggatcaggatcagttctgcggatacagcccctgcgtgttcatcgagatgaa
gctatctatgagtgcacagcaaccaatagtgttggggagataaacacgagtgccaaatta
acagtgttagaagaagaccacctcccagctggcttcccgaccattgacatgggtccgcag
ctaaaggtggtggaaaaggctcgcacagccacaatgctctgtgctgccagcggtaaccct
gatcctgaaatctcctggtttaaggacttcctgcctgttgacactgcaactagcaatggg
cgaatcaagcagctccgctcgggtggtacaccgatcagaggagctctgcaaatagagaac
agcgaggagtcagaccaaggcaaatatgaatgtgttgcaaccaacagcgcaggaacccgc
tactctgccccagcgaacctttatgttcgagtgcggcgtgttgctcctcgattctctatc
cctccgagcaaccacgaggtgatgccaggggggagcgtgaacctcacatgcgtggcagta
ggtgctccgatgccctacgtgaagtggatggctggtgtggaggaactgaccaaagaagat
gagatgcccgttggtaggaacgtcctggagctgaataacatcgtgcagtctgccaactac
acctgcgtggccatctcttctctcggcatgatcgaagccacagcccagatcactgtcaaa
gcactgccaaaacctccaacagagccattagtgactgaaacgacagctaccagcgtgacc
ctcacctgggattcgggcaactccgaccccatttcatattacgtcatccagtacaaggcc
aaatccttggagggtcagttccaggaggtggatggtgtggcaacaacccgctatagcata
ggtgggctcagccccttctcggagtatgagttccgggtcattgcagtcaataatattggc
aggggtccccccagtgagctggtcgaggcccggacaggagagcaagctccttcaagccca
cccctcaaagtccaagcacggatgctgagcgccagcaccatgctggtccagtgggagcag
ccagaggagccaaatggacagatcagagggtaccgcgtttactataccaccgacccacat
ctgcctttgagcatgtggcagaaacacaacaccgacgacagccatctcaccaccgtgggg
agcctcatcacagggaccacgtacagcatccgcgtcctggcctttacttcggtgggcgac
gggcccccctcggacatcatccaggtcaaaacacagcaaggggttcctgcccagccagct
gacttccaggcagaagcagagtctgatacccgcatcctgttgacgtggctgccagcctct
caggaacgcattaccaaatacgagctgctgtactgggaaggggaggatggcactcagcaa
aaggtggagtttgacccaacatcctcgtatgctgtggaaggtctcaaaccagacacgctg
tataagttccgtctgggtgcccgctcagagctgggggtaggagtctacacccccacaatc
gaagccagaactgcccaatccaccccctccgccccaccccaagaagtcgagtgtgtaagc
accagctccactaccatccgggtaagttgggtgccaccgcctgcccagagccgcaatggg
gtcatcacccagtactccattgcataccaggcagtggaaggagatgacaacaccaagcat
gtggtggatggcattggacgtgagcactccagctgggagatcaaggacctggagaaatgg
accgagtacaaggtgtgggtaagggctcacaccgatgtggggccaggaccggagagcatc
cccgtgcatgtgcgcacggatgaggatgtgcccagtgccccaccacgaaaggtggaggta
gagtctgtgaattcaacggccatccgggtgagctggaagctgcccatctccaacaagcag
catgggcagatccgtgggtaccaggttacgtacgtgaagctggaaaacaacgagccccga
gggcagccagtgatcaaggacgtcatgctgtcagaagcacagtggagagctgaggactcc
gtggaccatgagacggtgataggaggcctgctgccggaaaccacctactcggtcacggtc
gctgcctacaccaccaaaggagatggtgcccgcagcaagccaaaagtcatcaccaccaca
ggggcagtcccggggaagcccaccatgatgattagcacgacagccatgaacacagccctc
atccagtggcacccacccaaggagatggtaggggagctgctgggttaccggctgcagtac
agacgtcttgatgaggaaaagatgaacacgatagacttcgggaagagagaccatcactac
actgtgaccaacctgcacaagggggccacatacgtcttcaaattgtctgccaagaacaga
gctggcccgggagaggagtttgagaaggagatcactactgcagaagatgtgccaagtggc
ttcccacagaacctgcgtgtggtgggtctcaccacttccaccacagaagttgcatgggac
cccccggtcttggcagaaagaaacggcaagatcgtcaactacacagtggtatacagggac
ataaatagccagcaggacctggttaacatcaccaaggacacaagtatcactttgacgaat
ttgaagcccgatactacttacgacatcaaagtgagggcccgcaccaataaaggggttggg
ccgctcagccccagcatccagtcccggaccatgcctgttgagcaagtgtttgctaagaac
ttccgcgtcaatgccgtcatgaaaacgtctgtgctgctgagctgggaagtgcctgactcc
tataaatctgcagtgccttttaagattctgtacaatagccagagtgtggaggtggacggc
cactcgatgaagaaactcataagtgacctccagccagacacggactattcttttgtgcta
atgaatcgcgggagcagtgctggggggctccagcacctcgtctcaatccgaaccgctcct
gacgtcttgcagagcaaacccatcgccacaaacaagtacatacaggaaggaaaattcacg
ctcacccttcccaaagtccagaccactgtgccagttaggtggtactacatcgtggttgtg
ccagcggatcagagcaccagcagcccaactgctcggtggcggacacctgatgagatggag
ctggaccagctgctggaggccataagccaagggagtcagagcaggcgccagcgacgccag
gcagacagactcaagccctacattgctgctcaagtggatgtgctgcctgagaccttcact
ctgggggacgagaagaactacaaaggtttctacaacaagcccctgtctcaagacctgagc
tatcgctgcttcgtgctggcctcgctggaggatggagacacgaagagatatgcagcgagc
ccctactcggatgagatcgtgatggaagtggcttcagcaaagcagcaggatgaaccggag
atgctgtgggtgatgggacctgtcctggccgtgatattaatcatcatcattgtcattgct
atactcctcttcaaaaggaaaagggcgcactccccctcttccaaggatgagcactccatc
ggtctgaaggactcgctcttggcccactcctctgacccggttgagatgaggcggctcaac
taccagactccaggtgccagtgtccccagttgcccgaatatctcaagcatgcgtgaccac
ccccccatccccgtgacggacctcgccgataacatcgacaggctgaaagccaacgacggg
ctgaagttctcccaggagtacgagtccattgatccagggcagcagttcacctgggagaac
tccaacctggaagtgaataaaccaaaaaaccgctatgcaaatgtgatcgcctacgaccac
tcacgcgtcatcctgacctccatcgatggggtcccaggcagtgattacatcaatgccaat
tacattgatgggtatcggaagcagaatgcctacatcgccacgcagggacctctgccagaa
actctcagcgacttctggaggatggtgtgggaacagagaacagcaactatagtcatgatg
accaggctggaggagaagtccagggtaaaatgtgaccagtactggccaagccggggtaca
gaaacctatgggatgatccaggtgaccctgttggacacagtcgagctggcaacctacacc
gtccgcacctttgcactgtacaagaacggctccagtgagaagcgagagctacgacagttc
cagttcatggcctggcccgatcacggcgtgccagaataccccaccccgatcctcgctttc
ttgcgacgggtcaaggcctgtaacccaccggatgctgggcccatggttgtccattgcagt
gccggcgtgggacgaactggttgtttcattgtcattgatgccatgctggagcggatgaag
catgagaagacggtggacatctacggccacgtgacgtgcatgcgctctcagcgcaactac
atggtgcagacggaggaccagtacatcttcatccacgaggccttgctggaggcagccacg
tgtggcaataccgaggtgcctgcacgcaacctcttcgctcacatccagaagctgacccag
gtgccaccaggcgagagcgttactgcaatggagctggaattcaagctgctggccaactct
aaagcacatacctcacgtttcatcagtgccaacctcccgtgcaacaaattcaagaatcgc
ctcgtcaacatcatgccatatgagctgacaagagtctgtctgcagcccatccggggtgtc
gagggctccgattacatcaatgccagcttcatagatgggtacaggcagcagaaggcctac
atcgccacccagggaccgctggccgagaccacagaggatttctggcggatgctctgggag
cacaactccaccatcgtggtgatgttgacaaagctgcgcgagatgggccgggagaagtgc
catcagtactggcccgcagagcgctctgcccggtaccagtacttcgtggtggaccccatg
gcagagtacaacatgccgcagtacatcctccgggagttcaaggtgacagatgccagggac
ggccagtcacggaccatccgccagttccagttcacagactggcctgagcagggagtgcca
aagacaggagagggcttcatcgacttcattgggcaggtgcacaagaccaaggagcagttc
ggacaggatgggcccatcacggtgcactgcagtgctggggtcgggcgcacaggcgtgttt
atcacgctcagtatcgtgctggagaggatgcgctacgagggggtggtggacatgttccag
acggtgaagaccttgcggacgcagcgaccagccatggtgcagacagaggaccagtaccag
ctgtgctacagagcggcactggagtatctcggcagcttcgaccactatgcaacgtaa
DBGET
integrated database retrieval system
