KEGG   Chroicocephalus ridibundus (black-headed gull): 134521859
Entry
134521859         CDS       T10910                                 
Symbol
PDGFRB
Name
(RefSeq) platelet-derived growth factor receptor beta
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04010  MAPK signaling pathway
crid04020  Calcium signaling pathway
crid04510  Focal adhesion
crid04518  Integrin signaling
crid04540  Gap junction
crid04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    134521859 (PDGFRB)
   04020 Calcium signaling pathway
    134521859 (PDGFRB)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    134521859 (PDGFRB)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134521859 (PDGFRB)
   04540 Gap junction
    134521859 (PDGFRB)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    134521859 (PDGFRB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:crid01001]
    134521859 (PDGFRB)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:crid04090]
    134521859 (PDGFRB)
Enzymes [BR:crid01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     134521859 (PDGFRB)
Protein kinases [BR:crid01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   134521859 (PDGFRB)
CD molecules [BR:crid04090]
 Proteins
  134521859 (PDGFRB)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set ig Ig_2 V-set VEGFR-1-like_Ig-like C2-set_2 VEGFR1-3_N_Ig-like
Other DBs
NCBI-GeneID: 134521859
NCBI-ProteinID: XP_063204967
LinkDB
Position
11:complement(18162306..18196471)
AA seq 1093 aa
MLRPSLKTSLWLLVLGGLLEVTSGDSRLHIEPRDTELVLGLHSTFSLLCYGDGALVWERE
GQPLDASLEHRDGFFVSNLTLRNVTGRHTGEYTCAYSPDQAPEPAERKALYIYVPDPSLV
FLPTITSEELFIFITGYTEAVIPCRVTNPQMQVTLYEKKVENPIPAAYDPQQGFKGFFED
KTYFCRTIVDDQEVDSDTFYVYRIQVSSVNVSISAVQTIVRQGENVTLMCTVSGNELVNF
NWDYPRKQAGKAVEPVTDFLPGSTHEIRSILIIQNAELEDSGTYVCNVSEGYHEKTDRKD
ITVHVIERGFVRFHTHLPSTVYAEVHKSRTIQVEVEAYPQPSIVWLKNNKTLTMESSSEF
TITSRNLSETRYQTALVLVRVKQEEGGFYTIRASNEDDEQELSFHLQINVPAKVVDLKEN
SSASSGEQTVTCSAEGMPQPEISWSTCSDIKWCSAKGQPTRLLGNESSEIGLQTNATYHA
ELQVYRVNSTLQLHRVDEPLLLRCTVQNFLGTNSQDITLVPHALPFKVVIISVILALLVL
TVISLIILIVLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSSWEVPRDKLVLGR
TLGSGAFGRVVEATAHGLSHSQSSMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNI
VNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQSYGEKARREAEMYGNTAKEDHV
QSHLSLSVESDGGYMDMSKDDSLDYVPMSDMKGEVKYADIESSNYGTPYELDSYSPSAPE
RTDRVTLINESPLLSYMDLVGFSFQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICD
FGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPY
PELPMNEQFYNAIKRGYRMSKPTHASDEIYDIMQKCWEEKFEIRPSFSQLVVLMGNLLVD
CYRKRYHQVDEEFMRSDHPAVVRTRPTIPGLNNARLPPSSPTGSILYTAVHQNGGENDYI
IPLPDPKPEAICDLPQEASISRASSTLNEANTSSTISCDSPLGLRQDEEQESDPQPGCQE
PSTGHQEVEESFL
NT seq 3282 nt   +upstreamnt  +downstreamnt
atgctgcgcccctctctgaagacatctctctggctcctcgtccttggcggtctgctggag
gtaacatctggggacagcaggttgcacatcgaacccagagacactgagcttgtccttggc
ctccacagcaccttctccctcttgtgctatggggacggcgcgctggtttgggaacgggag
ggtcagcccctcgacgcctcgctggagcacagggatggtttcttcgtcagcaatctcacc
ctcaggaacgtgacggggcgccacaccggggagtacacgtgtgcctacagccccgaccag
gctccagagccagcagagaggaaagccctgtacatctacgttccagatccttctctagtc
ttcctccccacaatcacctccgaagagctcttcatcttcatcacgggctacacagaggct
gtcatcccatgccgcgtgaccaacccacagatgcaggtgaccctctatgagaaaaaggtg
gagaaccccatcccagctgcttatgacccacaacagggattcaaaggcttctttgaggat
aagacctatttctgccggacaattgtggatgaccaggaggtggattcagacaccttctac
gtctacaggatccaggtctcatctgtgaacgtctccatcagcgcagtgcagaccatagtg
cgtcagggagaaaacgttaccctgatgtgcaccgtgagcggcaatgagctggtcaacttc
aactgggattatccccgcaagcaagcagggaaggctgtggagccagtgaccgacttcctg
cccggatccacccacgagatccgctccatcctcatcatccagaatgcagagctggaggac
agcgggacctacgtctgcaacgtctctgagggctaccatgagaaaacggaccggaaagac
atcacggtccatgtgatcgaacgtggctttgtgcgcttccacacccacctgcccagcacc
gtctatgctgaggtccacaagagccgcaccatccaggtggaggtggaggcctacccacaa
cccagcatcgtgtggctgaagaacaacaagacgttgactatggagagcagcagcgagttc
accatcaccagcaggaacctgtcagaaaccaggtaccagacagctctggtgctcgtgcgg
gtgaagcaggaagaaggaggattttacaccatccgggcttccaatgaggacgatgaacag
gagctgtccttccatctgcagataaatgtgccagccaaagtggtggatctcaaggagaac
agcagtgccagcagtggggagcagaccgtaacatgctctgctgaaggcatgccccagcca
gagatcagctggtctacttgcagcgacatcaaatggtgcagtgccaagggccagcccacc
cggctgctggggaacgagtcctcggagatcggtctgcagaccaatgccacataccacgca
gagctgcaggtgtaccgcgtcaacagcaccctgcagctgcacagggtagacgagcccctg
ctcctgagatgcaccgtgcaaaacttcctaggcaccaactcccaggacatcactctggtc
ccacacgccttgccattcaaggtggtcatcatctctgtcatcctggccttgctggtcctc
actgtcatctccctgatcatcctgattgtcctgtggcagaagaaacctcgttatgaaatc
cgctggaaggtgattgagtcagtcagctccgatgggcacgagtacatctatgtggatccc
atgcagctcccttacgactccagctgggaggtgcccagggacaagctggtgttaggacgc
actctcggctccggtgcctttggacgtgtggtggaggcaacagcccacggcctgagccat
tcgcagtccagcatgaaagtggcggtcaaaatgctcaagtccactgcccggagcagcgag
aagcaagccctcatgtccgagctgaagatcatgagccacttgggacctcacctcaacatc
gtcaacttgctgggggcctgcaccaaaggagggcccatctatatcatcaccgagtactgc
cgctatggagacctggtggactacctgcaccgcaacaagcacaccttcctgcagtcctac
ggagagaaggcacggcgagaggcagagatgtacgggaacaccgccaaggaggaccacgtg
cagagtcacctctccttgtctgtggagagcgacgggggctacatggacatgagcaaggat
gactccctggattacgtgcccatgtccgacatgaagggtgaagtcaagtacgctgacatc
gagtcctctaactatggcaccccgtacgagctggacagctattccccgtcagctcctgaa
agaacagaccgggtgacactgataaacgagtctccacttctcagctacatggacttggtg
ggcttcagcttccaggtggccaatgggatggagttcctggcttccaaaaattgtgtgcat
cgggacctggctgccaggaacgtcctcatctgcgaggggaagctggtgaagatctgtgac
tttggcctggcgagggacatcatgagggattccaactatatctccaaaggcagcaccttc
ttgcccctgaagtggatggctccagagagcatcttcaacaacctctacaccaccctgagt
gatgtgtggtccttcgggatcctcctctgggagatattcactctaggggggactccatac
ccggagctgcctatgaacgaacagttctacaacgccatcaaacgtggctatcggatgtcc
aaacccacccacgcctctgatgaaatctacgatatcatgcagaagtgctgggaggagaag
tttgagatcagaccatccttctcacagctggtggtgcttatggggaaccttttggtggat
tgttatagaaagaggtaccaccaggtggatgaagagttcatgaggagtgaccaccctgct
gttgtccgcacaagacccacaatccccgggctgaacaacgccaggctcccccccagctcc
cccaccggcagcatcctctacacagccgtgcaccagaatgggggcgagaacgattatatc
atccctcttcctgaccccaaacccgaggcaatctgcgatctccctcaggaggcctccatc
agccgggccagctcaacgctgaacgaggccaacacatcgtctacaatatcctgtgacagc
cctctgggcctccggcaggacgaggagcaggaatctgacccgcagccaggctgccaggag
ccaagcacagggcaccaagaggtggaggagagtttcctgtag

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