Chroicocephalus ridibundus (black-headed gull): 134523018
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Entry
134523018 CDS
T10910
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134523018 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crid03000
]
134523018 (KDM2B)
04121 Ubiquitin system [BR:
crid04121
]
134523018 (KDM2B)
03036 Chromosome and associated proteins [BR:
crid03036
]
134523018 (KDM2B)
Enzymes [BR:
crid01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134523018 (KDM2B)
Transcription factors [BR:
crid03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134523018 (KDM2B)
Ubiquitin system [BR:
crid04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134523018 (KDM2B)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134523018 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134523018 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
134523018
NCBI-ProteinID:
XP_063207451
LinkDB
All DBs
Position
13:5127360..5252803
Genome browser
AA seq
1289 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYRGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QKGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHIQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEK
PQEPTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQMERH
VIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRL
WTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSW
IAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSG
KEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSY
CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVT
KEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggcagaaggcggtacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtatcgcggggatttcgtgcat
gccatggacgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgacggatagtggacgtgatggatgtgaacacg
cagaaaggcgttgaaatgagcatgtctcaatttgtgagatactatgagacaccagaggcc
cagcgtgaaaaactctacaatgtcatcagcctggagttcagtcacactaagctggagaac
attgtcaagcgtcccaatgtggtggacttggttgactgggtggataatatgtggccccag
catttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccctaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggttgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagctgaaacaagggtatacg
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagttattcatcagat
tcgtggttagacatggatgaagaatcttgcgatgcccatatccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcccccaacagcacccac
tccgaagggaaggagggtgcaggaagaaaacaaaaagccacagtaatgagatacctgaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccccacggactatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctctcctagaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcggacggcccaaagggaaactgggcact
gcttctgcggtaaagctcgcagctaatcggacaaccgctggagcacgtcggaggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaaatttgggggacctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtgtgtctggtatgtggagaagctgggaaagag
gacaccgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaatagagataataaggaagtaacagatgctgcaaaacggaaaggg
gattgtgaagaaactcccaggcggaaatcagaggaacattccaaaaagactcaagttgac
tcaatactgaggagaaagtcagacgaagtgcatctgtggaggaaaaggaaatttgagaaa
ccccaggaacccactatgagaaagcggcggcgatcgtggaaggctccagatgaccgaact
gccatgatcaaacccctgcggcgcctcaagcaggagccagaggatgacctgccagaagca
cctcccaggtccaaggatagtgaccagtcacggtccagctcgcccactgcaggtcccagc
acggagggcgctgagcccagggacaagaagaagttcaagatgaggcggaaaaggcggctt
cccaataaggaactgagcaaggagctcagcaaggagctcaaccaggagatccaaaaaacc
gagaacagccttgccaatgagaatcaccaacccatcaaatctgaacctgagagcgagaat
gaggaacctaagcgtgctttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcaccagctcatccccagcctgcgaagcacacctcgg
ggaataacccggccaccgccttcgctctctcctcccaaatgcattcagatggagcggcac
gttatccggccacctcccatcagcccccctccggactcactccccctggatgacggggca
gcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagac
ttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagatta
tggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcatt
attaggagacagcctgtaacccttgatcttagctggacaaacatatctaaaaagcagctg
agttggcttatcaacagactgccaggtcttcgagacctgctgttgtcagggtgctcatgg
atagcagtgtcggcactttgtagttccagttgtcctttactccgaactctggacgtgcag
tgggcggaaggcctgaaagacgcacaaatgagagacctcttgtcgccacccacagataac
cggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcaggg
aaggagcagttctgtgggtcatgccacattcgcccggatatcagctcaggtcagatcgac
aaccggagtaaactacggaacatcgttgagctgcgtttggccggcctggatattacagat
gcgtctttacggctgatcataaggcacatgcctctgctctccaaactcaatcttagttac
tgtaatcacgtgacagatcagtctattaacctgctgaccgcggttggaaccaccacgcgg
gattcactaacagaaattaatttatcagactgcaataaggttactgatcagtgcctgtct
tacttcaaacggtgtggaaacatctgccagatcgacctgaggtactgcaagcaagtgaca
aaagaaggctgcgagcagttcatagcggagatgtccgtaagtgttcaatttgggcaagtg
gaagaaaaacttctgcaaaaactgagttag
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integrated database retrieval system
