Chroicocephalus ridibundus (black-headed gull): 134523987
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Entry
134523987 CDS
T10910
Symbol
AGRN
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04512
ECM-receptor interaction
crid04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134523987 (AGRN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134523987 (AGRN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
crid00535
]
134523987 (AGRN)
Proteoglycans [BR:
crid00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
134523987 (AGRN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
EGF_laminin
SEA
EGF
Kazal_CFAI
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
134523987
NCBI-ProteinID:
XP_063209625
LinkDB
All DBs
Position
16:7819701..7952081
Genome browser
AA seq
2064 aa
AA seq
DB search
MGGRAAVARALLALLGLALGGGGASCPERELERREEEANVVLTGTVEEIMNVDPVHHTYS
CKVRVWRYLKGKDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMW
PAHRNELMLNSSLMRITLRNLEEVEHCVEEHRKLLADKPNSYFTQTPPTPRDACRGMLCG
FGAVCERSSTDPSQASCVCKKTACPIVVAPVCGSDYSTYSNECELEKAQCNQQRRIKVIS
KGPCGSKDPCAEVTCSFGSTCVRSTDGQAAKCVCPSSCSGVPESTVCGSDGKDYRSECDL
NKHACDKQENVFKKFDGACDPCKGVLNDMNRVCRVNPRTRKAELLSRPENCPQKREPVCG
DDGVTYDNECMMGRSGAIRGLEIQKVRSGQCQHQDKCKDECKFNAVCLNRRGTTRCSCDR
ITCDGAYRPVCARDSRTYSNDCERQKAECHQKAAIPVKHSGPCDLGTPSPCLSVECTFGA
TCVVKNQEAVCECQQVCQGRYDPVCGSDNRTYGNPCELDSMACVLKREIKVKHKGPCDRC
GKCQFGAICEAETGRCVCPTECVPSSQPVCGTDGNTYGSECELHVRACTQQTNILVAAQG
DCKSCGSTVCSFGSKCVGGQCVCPRCERQPFAPVCGTDGLTYDNQCELQVASCQQKRSIE
VARMGPCEDECGSGGSGSGDGSECEQDRCRQFGGWWDEDAEDDRCVCDFTCLTVPRNPVC
GSDGVTYTNECELKKTRCEKRQDLYVTSQGACRALATTPPPLLVVHCSQTIYGCCPDNMT
LALGVGAAGCPSTCQCNPYGSYGGACDPATGQCSCKPGVGGLKCDRCEPGFWNFRGIVTD
SKSGCTPCNCDPVGSVRDDCEQMTGLCSCKTGITGMKCNQCPNGSKLGMTGCEKDPSAPK
SCEEMSCEFGASCVEVNGFAHCECPSPLCSEANMTKVCGSDGVTYGDQCQLKTIACRQGQ
VITVKHVGQCHESITHTSHTSPPTPLPTLPLDKLILPPPLRLTTRAPEPTELATSSLLLE
ARPTERDQATTRRVTTARPATTPWMTHGVYKSTVRPLSTAPVVLATTQPPFVESGSAEGS
GDQEMGISGDQESSGAGSAGEEEVEESQVTSTPAVERATCYNTPLGCCSDGKTAAVDAEG
SNCPATKVFQGVLILEEVEGQELFYTPEMADPKSELFGETARSIESALDELFRNSDVKKD
FKSIRVRDLGQSSAVRVIVESHFDPATSYTAADVQGALLKQIKASKKKTILVKKPQQEHV
KFMDFDWIPRLFTTTVTTTTATTMAPATTRRYTTAAAATTVHVLRPEAAGRPNAKMAGAG
STRRPTSTLPATTRRKPTRHPPTTRKPSRPCDSHPCLHGGTCEDDGKEFTCSCPAGKGGA
VCEKPIRYFIPSFGGKSYLAFKMMKAYHTVRIAMEFRTVELSGLLLYNGQNRGKDFISLA
LVGGFVELRFNTGSGTGIITSKVRVEPGKWHQLVVNRNRRSGMLSVDGEPHVSGESPTGT
DGLNLDTDLFIGGAPEDQMAVVADRTAATTGLKGCIRLLDVNNQMYDLREKGSDVLYGSG
VGECGNDPCHPNPCHHGGICHVKEAEMFHCECLYTYTGPTCADEKNPCDPTPCHVSATCL
VLPEGGALCACPMGREGDFCELVTEQDHTMPFLPEFNGFSYLELNGLQTFVPDLQDKMSM
EVVFLAKNPSGMIFYNGQKTDGKGDFVSLALHDGYLEYRYDLGKGAAVLRSKEPVPLNTW
ISVLLERNGRKGVMRINNGERVMGESPKSRKVPHTFLNLKEPFYVGGAPDFSKLARAAAI
STSFDGAVQRISIKGVPVLKEQNIRSAIEISPFRGHPCTRKPNPCQNGGTCSPRLESYEC
ACQRGFSGAHCEKVIIEKAAGDAEAIAFDGRTYMEYHNAVTKSEKALQSNHFELSIKTEA
TQGLILWSGKGLERSDYIALAIVDGFVQMTYDLGSKPVVLRSTVPVNTNQWIHIKAYRVQ
REGSLQVGNEAPIAGSSPLGATQLDTDGALWLGGMEKLSVAHKLPKAYSTGFIGCIRDVI
VDRQELHLVEDALNNPTILHCSAK
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atggggggacgagcggcggtggcccgggcgttgttagcccttttggggctagcgctgggc
ggcggcggggccagctgccccgaacgggagctggagcggagggaggaggaggccaacgtg
gtgttgacgggcacggtggaggagatcatgaacgtggaccccgtccaccatacctactcc
tgcaaggtgagagtctggcgttacctgaaaggcaaagacatcgtcactcacgagatcctc
ttggatggtgggaacaaggtggttatcggtggcttcggggacccgttaatctgcgacaac
caagtctcgactggggacacgcggattttcttcgtcaacccggcccctcagtacatgtgg
ccggcgcaccgcaacgagctgatgctgaactccagcctcatgcggataacgctgcgcaac
ctggaggaggtggagcactgcgtggaagaacataggaagcttcttgctgacaagcccaat
agttattttacccagacgccgccgacgccgcgagatgcgtgtcgagggatgctgtgcggg
ttcggggcggtgtgcgagaggagctccaccgacccttcccaggcttcctgcgtctgcaag
aagacggcctgccccatcgtggtggctcctgtctgcggctctgattattccacctacagc
aacgagtgtgagctggagaaggcccagtgcaaccaacagaggcggatcaaagtcatcagc
aagggaccgtgtggctccaaggacccgtgcgcggaggtgacctgcagcttcggcagcacc
tgcgtccgctccaccgacggccaggcagccaagtgcgtctgcccgtcgtcctgcagcggc
gtgcccgagagcaccgtgtgcggcagcgacggcaaagactaccgcagcgagtgcgacctc
aacaagcacgcctgcgacaagcaggagaacgttttcaagaagttcgatggcgcctgtgac
ccttgtaaaggcgtcctcaacgacatgaatcgtgtttgccgggtgaacccccgcacccgt
aaggcagagctgctctcccgccccgagaactgtccccaaaagagggagcctgtgtgcggc
gacgacggggtgacttacgacaacgagtgcatgatggggcgctcgggggccatccgagga
ctggagatccagaaggtgcgttcagggcagtgccagcatcaggacaaatgcaaggatgag
tgcaagttcaacgctgtctgcctgaaccgccggggcaccacgcgatgctcctgcgaccgc
atcacctgcgatggcgcctaccggcctgtctgtgcccgcgacagccggacctacagcaac
gactgtgagcgccagaaggccgagtgccaccagaaagctgccatcccagtaaagcacagt
ggaccctgtgacctggggacgcccagcccgtgcctgagcgtggagtgcaccttcggggcc
acctgcgtggtgaagaaccaggaggccgtgtgcgagtgccagcaggtgtgccagggccgc
tacgaccccgtctgcggcagcgacaaccgcacctacggcaacccctgcgagctcgactcc
atggcctgcgtcctcaagagggagatcaaagtgaaacacaaggggccctgcgaccgttgt
ggcaagtgccagtttggggccatctgcgaggcggagacgggacggtgcgtgtgccccacg
gagtgcgtcccctcctcgcagcccgtgtgcggcacagatggcaacacgtacggcagcgag
tgcgagctccacgtccgggcctgcacgcagcagacgaacattttggtggctgcccaagga
gactgcaagtcctgcggcagcacggtgtgctccttcggcagcaagtgcgtgggtgggcag
tgcgtgtgcccgcgctgcgagaggcagcccttcgctccggtctgcgggactgacggcctc
acctacgacaaccagtgcgaactgcaggtggcctcctgccagcagaagaggagcattgag
gttgccaggatggggccatgtgaggatgagtgcggctcagggggctcaggctccggcgac
ggtagcgagtgtgaacaggatcggtgccggcagttcggaggctggtgggacgaggatgca
gaggatgaccgctgtgtgtgtgacttcacttgcctgacggtgccgcgcaacccggtgtgt
ggctccgatggtgtgacctacaccaacgagtgtgagctgaagaagacacggtgtgaaaaa
cgccaggatctctatgtcactagccaaggagcctgccgtgctctggcaacaaccccaccg
cctctcctggttgtgcactgcagccagaccatctatggatgctgtccagacaacatgacc
ttggcgctcggagtgggcgcagctggatgcccaagcacctgccagtgcaacccctacggc
tcctacgggggagcctgcgaccccgcaacggggcagtgctcctgcaagccaggcgtgggg
ggcctgaagtgcgaccgctgcgagcccggcttctggaatttccgtggcatcgtcaccgac
agcaagagcggctgcacaccctgtaactgcgaccccgtgggctcagtgcgcgatgactgt
gagcagatgactggactgtgctcctgcaagactggtatcactggcatgaaatgcaaccag
tgccccaacggcagcaaactgggcatgactggctgtgagaaagacccgtcagccccaaaa
tcctgtgaagaaatgagctgtgagtttggggcctcgtgtgtggaagtcaacggctttgcc
cactgcgagtgcccgtccccgctctgctcggaggccaacatgaccaaggtgtgtggctct
gacggtgtcacttatggggaccagtgccagctgaagaccatcgcctgccggcagggacaa
gtcatcacagtgaagcatgtggggcagtgccacgagtccatcactcacacaagccacacc
tcgccacccacaccgctgcccacgctgcccttggacaagctaatccttcctccgccactg
cggctcaccacccgggctccagaacccaccgagctggctaccagctccctgctgttggaa
gccaggcctactgaaagagatcaggccacaacaaggcgcgtcacaactgccagaccagcc
actacgccgtggatgacccatggggtgtataagagcaccgtccgccctctctccaccgca
ccagtggtcctggccaccacccagccacccttcgtggaatcgggcagtgcagaaggtagt
ggagaccaagagatgggcatcagcggagaccaggaatccagtggggcaggctctgctggg
gaagaggaggtggaggaaagccaggtaacttccaccccagccgtcgagagggcgacgtgt
tacaacaccccgctgggatgctgctctgatggcaagaccgcggctgttgatgcggaaggc
agcaactgtccggctaccaaagtcttccaaggagtcctcatcttggaggaggtggaaggc
caggagctgttctacacgcctgagatggctgaccccaagtcagagctctttggggagacg
gccaggagcattgagagcgcgctggatgagcttttccgcaattctgacgttaagaaggat
ttcaagagcatccgtgtccgagacctggggcagagcagcgctgtccgtgtcattgtggag
tcccactttgaccctgccacttcctacacggcagctgatgtccaaggagccctgctgaag
cagatcaaagcttccaagaagaagaccatcctggtgaagaagccccagcaggagcatgtc
aaattcatggattttgactggatccccaggcttttcaccaccaccgtgaccacgaccacg
gccaccaccatggcacccgccaccacacggaggtacaccacagccgccgctgccaccacc
gttcacgtcctgcgcccagaagccgcgggccgacccaacgccaagatggcaggagctggg
agcaccaggagacccacctccaccctcccggccaccacccggcggaaacccacgcgtcat
ccccccaccacgaggaaaccctcgcgtccctgcgactctcacccctgcctgcacggtggc
acgtgtgaggatgacgggaaggaattcacctgcagctgcccagcaggcaaagggggagcc
gtctgtgaaaaacctatcaggtacttcatccccagcttcggtggcaagtcctacctggcc
ttcaagatgatgaaggcgtaccacaccgtgcgcatcgccatggagttcaggaccgtggag
ctcagcgggctcctgctctacaacgggcagaaccgaggcaaggacttcatttccctggcg
ctggtgggcggcttcgtggagctcaggtttaacaccggctctggcacgggcatcatcacc
agcaaggtccgcgttgagcctggcaagtggcaccagttagtggtgaaccgcaatcgccgc
agcggcatgctgtctgtcgacggggagccccacgtcagtggggagagccccacgggcacc
gacgggctcaacctcgacacagacctcttcatcgggggagcgccggaggaccaaatggct
gtggtggcagatcgtactgcggctacaaccggcctgaagggctgcatccgcctcctggac
gtgaacaaccagatgtacgacctgcgggagaaaggcagtgatgtgctgtatggcagcggg
gtgggcgagtgcggcaacgacccctgtcaccccaacccctgccaccatggtggcatctgc
catgtcaaggaggcagagatgttccactgcgagtgtctctacacctacaccggcccaacg
tgtgctgacgagaagaatccctgtgaccctacgccctgccacgtctctgccacctgcctg
gtgctgccagagggaggtgccttgtgcgcctgtcccatgggccgggaaggagacttctgc
gagctagtgacagagcaggaccacaccatgcccttcctcccggagttcaatggcttctcc
tacctggagctgaatgggctgcagaccttcgttcctgacctgcaggacaaaatgtccatg
gaagttgtgttcctggccaagaaccccagcggcatgatcttctacaatgggcagaagaca
gatggcaaaggggactttgtctctctggccttacacgatggctacctggagtacagatac
gacctgggcaaaggggctgctgtgctcaggagcaaagagccggttcccctcaacacctgg
ataagcgtcttgttggagaggaatgggcgcaaaggggtaatgcggatcaacaacggcgag
agggtgatgggagagtcaccgaaatcccgtaaggtgcctcacaccttcctgaacctgaag
gagccattttacgttgggggagcccctgatttcagcaagctagctcgagcagccgccatc
tccaccagcttcgatggagctgtgcagaggatctccatcaagggggtgcctgtgctgaag
gagcagaacatccgcagcgccattgagatctcccccttccgaggccacccctgtacccga
aaacccaatccttgccagaacggaggcacttgcagcccccggttagagagctacgagtgt
gcctgccagcggggcttctccggggctcactgcgagaaagtgatcattgagaaggctgcc
ggagacgcagaggccattgcttttgatggtaggacatatatggagtaccacaatgccgtg
acaaagagcgagaaggccttgcaatcgaaccactttgaactaagcatcaaaacagaagcc
acgcaggggctgatcctgtggagcgggaaagggctggagcgctcagactacatcgccctc
gccatcgtggatggcttcgtacaaatgacctacgatctcggctccaagccagtcgtccta
cgatccacggtcccagtcaacaccaaccagtggattcatatcaaagcgtacagggtacag
agagaaggctcccttcaagtcggcaatgaagcccccatcgctggctcttctccgcttggt
gcgacacagctagatacagacggggccctgtggctggggggaatggagaagctgagcgtg
gctcacaagctgcccaaggcctacagcaccggctttattggctgcataagggacgtgatt
gtcgaccgccaagaactgcatctggtggaggacgctttaaacaaccccacgatattacac
tgctcagccaaatag
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