Chroicocephalus ridibundus (black-headed gull): 134524410
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Entry
134524410 CDS
T10910
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134524410 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134524410 (EFTUD2)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134524410 (EFTUD2)
Complex C
U5 SnRNP specific factors
134524410 (EFTUD2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
134524410
NCBI-ProteinID:
XP_063210503
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Position
17:7025146..7047676
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacattgggccggagttggactcggac
gatgacgatgatgagttgggcagagagtccaaggatctggacgagctcgaggatgatgac
gatgatgacgatatgggggaccatgacgaggaccaccctgggatggaggtggtgctgcac
gaggataagaaatactatcccaccgctgaggaggtctatgggcctgaagtggagaccata
gtacaagaggaagacacgcagcctctcactgagcctattattaaacctgtgaaaaccaaa
aaattctctctgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaatgtgactctgtgtgggcaccttcaccac
ggcaagacttgtttcgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tacgaccaggacctttgctacactgatatattgttcacagaacaagagaggggagtgggg
atcaagagcacaccagtgacgattgttctgccggacaccaaaggaaaatcttttctcttc
aacatcatcgacactccaggtcacgtcaatttttctgatgaggtgacagctggccttcgt
atttcggacggcgttgtgcttttcattgacgcggccgagggggtgatgctgaacacagag
cggctgatcaagcacgcggtgcaggaaaggctcgcggtgaccgtgtgcatcaacaagata
gaccgactcatcctggagctgaaattgccccctacagatgcttattacaaactcagacat
attgtggatgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgttctg
tctccccttctggggaacgtgtgtttctccagctcgcagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagacatcaattatcaggagtttgca
aagcggctttggggtgacatctacttcaaccctaagacccgcaagttcactaaaaaggcc
ccaacgagcagttcccagcgcagttttgtggagttcattctggagccgctgtacaagatc
ttggctcaggtggtgggggacgtggacacgaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaaattgaacattcggcccctcctgcggcttgtctgc
aagaagttctttggggaattcacaggctttgtggacatgtgcgtgcagcatatcccctcc
ccgaaggtgggagccaagacgaaaatcgagcatacctacactggtggcgttgactccgat
ctaggggaggccatgagtgaatgcgaccccgacggcccgctgatgtgtcacacgacgaaa
atgtacagcacagacgacggcgttcagttccacgccttcggcagagtgctcagtggtacc
atccacgctgggcagcctgtgaaggtccttggagaaaactacaccctggaagatgaggag
gattcccagatctgcactgtcggccgcctctggatctcggttgcgaggtaccacattgag
gttaaccgggttcctgccggcaactgggtgctgatagaaggcgtggaccagcccatagtg
aagacggcaactgtcacggagcctcggggcaacgaggaggctcagatcttccgtcctttg
aagttcaacaccacatctgtcatcaagatagctgtagagccagtcaacccctcggagctc
cccaaaatgttagatggtctccgcaaagtcaacaagagttacccctcgcttactactaag
gtggaggagtccggggagcacgttatcctggggacgggggagctctacctggattgtgtg
atgcacgatctacggaagatgtattcagagattgatatcaaggtcgccgatccagttgtg
acgttctgtgagacagtggtggaaacgtcctccctgaagtgctttgccgagacacccaac
aagaagaacaagatcacgatgattgctgagcctctggagaagggactcgcggaggacatt
gaaaatgaagtggtccagataacctggaacagaaagaagctgggtgaattcttccagacc
aaatatgactgggatttgctggctgcccgttccatctgggcctttgggccagacgccact
ggcccaaacatcctggtagacgatacgctgccctcagaggtggacaagtcgctgctgggc
tctgtgaaggacagcattgtgcagggatttcagtggggaaccagggaggggcctctctgt
gacgaactgatccgcaacgtgaagtttaagatcctggatgcggtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccgacggcccggagagtggtctattctgctttc
ctgatggccacccctcgcttgatggagccctactacttcgtggaggtgcaggctcctgcc
gactgcgtgtctgcggtgtacacggtcctggccaggcggagaggccacgtgacgcaagat
gctcccatcccgggctcccctctctacaccatcaaagccttcatcccagccattgattca
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctcgctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccgaccc
ctggagccccagccagccccgcatctggccagagagttcatgatcaagaccaggcgtagg
aagggcttgagcgaggacgtgagcatcagcaagttcttcgatgaccccatgttgctggag
ttggccaaacaagacgtcgttctcaactaccccatgtga
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