Comamonas resistens: QMY55_12830
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Entry
QMY55_12830 CDS
T09688
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crj
Comamonas resistens
Pathway
crj03030
DNA replication
crj03410
Base excision repair
crj03420
Nucleotide excision repair
crj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QMY55_12830 (ligA)
03410 Base excision repair
QMY55_12830 (ligA)
03420 Nucleotide excision repair
QMY55_12830 (ligA)
03430 Mismatch repair
QMY55_12830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crj03032
]
QMY55_12830 (ligA)
03400 DNA repair and recombination proteins [BR:
crj03400
]
QMY55_12830 (ligA)
Enzymes [BR:
crj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QMY55_12830 (ligA)
DNA replication proteins [BR:
crj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QMY55_12830 (ligA)
DNA repair and recombination proteins [BR:
crj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QMY55_12830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QMY55_12830 (ligA)
MMR (mismatch excision repair)
DNA ligase
QMY55_12830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QMY55_12830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_Ribbon_TF
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WHS63441
UniProt:
A0ABY8SQ92
LinkDB
All DBs
Position
complement(2742020..2744146)
Genome browser
AA seq
708 aa
AA seq
DB search
MTENLDLFSAEPQDQKAPAAIKNGVPETVMAKTAALRAQLNQWAHEYYVLDTPTVPDGEY
DRIYQQLEALEGAYPALVTPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIA
FDQRVRKELGLDESAAAIEYVAEPKFDGLAMNLRYENGVLVQATTRGDGEVGEDVTHNIR
TIRQIPLTLSAAAKVPPVVEVRGEVHMMRADLEKLNERQLAAGGKTFANPRNAAAGSVRQ
LDSKIAAQRPLSFFAYGLGEITPADQGGPDFGTHYGMLQTLKSWGFPVAPQVCVATGASE
LVAFHERIGAERASLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLME
AIDVQVGRTGKLTPVARLAPVQVGGVVVTNATLSNLFDIRKKGVRVGDQVIVRRAGDVIP
EVVGKVAGERPLYVPNFRMPKTCPICGSEVVREKGEANHRCTGGLFCGAQRKEAILHFAH
RRAMDIEGLGDKLVDQLVDGQVVRVLPDLYKLGLTSLAALDRMAEKSAQNVLAALEKSKS
TTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIHTFFA
QPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLGRDTAKDMLEAAGAK
VSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLSGERPA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatttagaccttttttccgctgaaccccaggaccagaaggcgccagcagct
atcaaaaatggggtgcctgaaacggtgatggccaagacggccgcactgcgtgcgcagctc
aaccagtgggcgcacgaatactatgtgctggacacccccacggtgcccgacggcgagtac
gaccggatctaccagcagctcgaagcacttgaaggagcctatcccgcacttgtcacgccg
gactctcccacgcagcgcgtgatcggtgcggtgctggatggcctgacaccggtgcgccat
gccgtgcccatgctcagcatccagaccgagaccgataacgaggctacgggcgccatcgcc
tttgaccagcgcgtgcgcaaggagctgggcctggatgagtccgctgcagccatcgaatat
gtggccgagcccaagtttgacggcttggccatgaacctgcgctacgagaatggcgtgctg
gtgcaggccaccacacgcggtgatggcgaggtgggcgaggacgtgacgcacaacatccgc
accattcgccagatcccgctgacgctgtccgctgcggccaaggtgccgcctgtggtcgag
gtacgtggcgaggtgcacatgatgcgggccgatctggaaaagctcaacgagcgccagctg
gcagccggtggcaagacttttgccaacccgcgcaatgcggcggcaggctcggtgcgccag
ctggactcgaagattgcggcccagcgtccgctgtcgttctttgcctatggcctgggcgag
atcacgccagccgatcagggtgggcccgacttcggcactcactacggcatgctgcagacg
ttgaaatcctggggttttccggttgcaccgcaggtgtgtgtggcgacaggcgcttcggaa
ttggtagcgtttcacgaacgcataggcgccgagcgcgccagtctgccctatgagatcgac
ggcgtggtctacaaggtcaacagtctggcgctacagcgccagctgggcttcaagtcgcgc
gagccgcgctgggctgtggcgcacaagtatccggcccaggagatgcccacgctgatggag
gccatcgacgtgcaggtcggccgcaccggcaagctcacacccgtggcgcgcctggcaccc
gtacaggtagggggtgtggtggtgaccaatgccaccttgtccaatctgttcgacatccgt
aagaaaggcgtgcgcgtgggcgaccaggtcatcgtgcgccgcgccggcgatgtgattccc
gaggtggtgggcaaggttgccggcgagcgacctttgtatgtacctaacttccgcatgccc
aaaacctgccccatctgcggcagcgaagtggtacgcgaaaagggcgaagccaaccaccgc
tgcacgggcggtctgttctgcggtgcgcagcgcaaggaagccatcttgcacttcgcccac
cgccgtgccatggatatcgagggtctgggcgacaagctggtcgaccagctcgtcgatggc
caggtggtgcgcgtgctgcccgatctgtacaagctgggcctgacctcgttggcggcgctg
gatcgcatggccgagaaatcggcccagaacgtgctcgcggccctggagaaatccaagagc
accacgctgcagcgctttctgttcggtctgggcattcgcaacgtaggtgagtccacggca
cgtgatctggccaagcatttcggcaagctcgacgccatcatggacgccagtgtggaagag
ctgctgcaggtcaaggatgtaggtcctgtggtggccgacagcattcacaccttttttgcc
cagcctcataaccgcgaggtggtggagcagctgcgcgcctgtggcgtgcactgggaggaa
ggcgagccggccgagaaggcgccgcagattctggcggggctgacggtcgtgctgaccggt
accctgcccacgctgggccgcgataccgccaaggacatgctggaagccgctggtgccaag
gtctccggctcggtcagcaagaagaccagctatgtggtggccggtgcggaggcgggctcc
aagctggccaaggccgaagagctgggcgtgcccgtgctggacgaggccggcatgctggcc
ttgctcagcggtgagcgaccggcctga
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