Cylindrospermopsis raciborskii: L3I90_00855
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Entry
L3I90_00855 CDS
T08337
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crk
Cylindrospermopsis raciborskii
Pathway
crk03030
DNA replication
crk03410
Base excision repair
crk03420
Nucleotide excision repair
crk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3I90_00855 (ligA)
03410 Base excision repair
L3I90_00855 (ligA)
03420 Nucleotide excision repair
L3I90_00855 (ligA)
03430 Mismatch repair
L3I90_00855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crk03032
]
L3I90_00855 (ligA)
03400 DNA repair and recombination proteins [BR:
crk03400
]
L3I90_00855 (ligA)
Enzymes [BR:
crk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L3I90_00855 (ligA)
DNA replication proteins [BR:
crk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3I90_00855 (ligA)
DNA repair and recombination proteins [BR:
crk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L3I90_00855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3I90_00855 (ligA)
MMR (mismatch excision repair)
DNA ligase
L3I90_00855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3I90_00855 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
RNA_ligase
Zn_ribbon_NUD
DUF4796_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UJS04849
LinkDB
All DBs
Position
complement(195711..197783)
Genome browser
AA seq
690 aa
AA seq
DB search
MGLTIQLHAESQRVEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVT
SDSPTQRVGERPATHFSSVRHNIPLYSLENAFNVEELQSWNQRWIRHLPTPHSLTEVEYV
AELKIDGAALALTYQNGVLVRGATRGDGITGEDITPNVRTIRSIPLRLNFDGIESIEKVE
VRGEVFLPLEVFKQINQKRQKAGEQLFANPRNAVAGTLRQLDPRVVAQRQLDFFAYTLHI
PGLDDRSIANTQWESLQLLQKLGFRVDVNHKLCSSVDEVAQYYQYWNTERLNSPYMTDGV
VVKLNAFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIMVNVGRTGALTPLAEMRPVQ
LAGTTVSRATLHNNDRLQELDIRIGDTVIVRKAGEIIPEVVRVIKELRPNDTEPFIMPTN
CPVCGQPVVRELGEVVTRCVNASCPAILKGEIEHWVSRDALDIKGIGEKLVHQLVDKGLV
HSVADLYNLTEEQLCGLERMGKRSAEKLVQVIRESKNQPWSRVLYGLGIRHVGSVNAQLL
SEKFTTVDKLASAKQSDIEGVYGIGVEIAQSVYQWFHISANQNLIIRLETIGIQLATGKS
VHTRTKPNPQIAGKTFVITGTLPTLKRDEAKAMIQKAGGKVTDTVSKKTDFIVVGADAGS
KLEKAQSLGIKQLDEANLLEMLMIQEPVKS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttactatccaactccatgctgaatcacaacgtgtggaagaactaagaaaactg
ttacaacaagctggctatgcctactatgttctcgactcaccaatcatggaggatacaatt
tatgacagattatatcgggaattacaagaactagaaaaaaaatatccaaacctggttact
agcgacagtcctacccaacgggtgggggagcgacctgctacccattttagctcggtgcga
cataacatacctttatatagtctggagaatgcttttaatgttgaggagttacaaagttgg
aatcagcgatggattagacatttacccactccacactccttgacggaagtagaatatgta
gctgaactgaaaattgatggtgctgctttggctttaacttatcaaaatggggttttggtt
agaggtgcaaccaggggtgatggaatcaccggtgaggacattactcctaatgtgagaact
attcgctccatacccctacggttaaactttgacggaattgaatcgattgaaaaggtggaa
gtgcgaggagaagtgtttttacctttagaggtatttaaacagattaatcaaaaaaggcaa
aaagctggtgaacagttatttgctaatccccgtaatgctgtagctggtacacttcgacaa
ttggatccccgtgtggtggcccagcgtcaactggatttctttgcttataccctacatatc
cccggactggatgatagaagcattgctaatactcaatgggaatctctacaattattacaa
aaactcggatttcgcgttgatgtcaatcataaactctgttcttccgttgatgaagtggct
caatattatcagtattggaatacggaaagacttaattctccttacatgactgatggagtg
gtagtaaaattaaatgcctttaaattgcaagaacaattggggtttacacagaaattcccc
cgctgggcgatcgctctgaaatatgcagcggaggaagcacctactcgtgtggaaaatatt
atggttaatgtgggaagaacaggagcattaacccccctagctgaaatgcgccccgtacaa
ttagcgggaactacagtatctagagctacgctacataataacgatcgcctgcaggagtta
gatattcggattggggacacggtgatagtacgcaaagctggagaaattatcccggaggtg
gtcagggtaattaaggaactgcgtcctaatgacactgaaccatttattatgcccactaat
tgtcccgtatgtggtcaaccggtagtgcgagaattgggggaagtggtgacaagatgtgtg
aatgcttcctgtccagcaattctcaagggagaaatcgaacattgggttagtcgagatgct
ttggatattaagggaataggtgaaaaactagtacatcaattagtggataaaggtctagtg
cattccgtagctgatttatataatctaacagaagagcaattatgtggattggaaagaatg
ggcaaaagatccgcagaaaaactagtccaagtaattagggaatcaaaaaatcaaccttgg
tctagggtattatatggtttaggtattcgtcacgtgggtagcgttaatgctcaattactg
tccgaaaaatttaccacagtagataaattggccagtgcaaaacaatcagatattgagggt
gtatatggcattggtgtagaaattgcccaatccgtgtaccaatggtttcacatcagtgcc
aatcaaaatctgattatccgtctggaaactataggtatacaactggccactgggaagtct
gttcacactaggactaaacctaatcctcaaattgctggtaaaacctttgtaattacaggt
accttacccacattaaaaagagatgaagcaaaagctatgattcaaaaagctggtggtaag
gtcacagacacagtgagcaagaaaactgactttattgttgttggtgcagatgcaggatcc
aaattagaaaaagctcaatctctgggaattaagcaactagatgaagctaatctattagaa
atgctaatgattcaggaacctgttaaatcatga
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