Paracrocinitomix mangrovi: K6119_19400
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Entry
K6119_19400 CDS
T07876
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crm
Paracrocinitomix mangrovi
Pathway
crm03030
DNA replication
crm03410
Base excision repair
crm03420
Nucleotide excision repair
crm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6119_19400 (ligA)
03410 Base excision repair
K6119_19400 (ligA)
03420 Nucleotide excision repair
K6119_19400 (ligA)
03430 Mismatch repair
K6119_19400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crm03032
]
K6119_19400 (ligA)
03400 DNA repair and recombination proteins [BR:
crm03400
]
K6119_19400 (ligA)
Enzymes [BR:
crm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6119_19400 (ligA)
DNA replication proteins [BR:
crm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6119_19400 (ligA)
DNA repair and recombination proteins [BR:
crm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6119_19400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6119_19400 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6119_19400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6119_19400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
UKN01892
LinkDB
All DBs
Position
complement(4361287..4363296)
Genome browser
AA seq
669 aa
AA seq
DB search
MSEDIKNRIDKLVKEINFHNNAYYVKSAPVISDFEFDQMLKELEQLEHDYPQFASANSPT
KRVGGDITKKFESVTHEFPMLSLSNTYSEDEIKDWVVRIKKLSEEEITYVCELKYDGVAI
GIRYKNGELERAVTRGDGTQGEDVTTNVKTIKTVPLTLHTETPAEFEIRGEIFFPLENFS
KLNKLRAEAGEELYANPRNTASGTLKSQDSKIVAERGLDCYLYGVYGYDLNFTSHSEAVK
TAGEWGFKIPDSNKRMIENCKTIEEIMDFISYWDKNRFQLPFEIDGVVIKVDNYDQQEQL
GFTAKSPRWAIAYKFKAEQVSTRLNEVTYQVGRTGAITPVANLEPVLLAGTTVKRASLHN
QDQIEKLDLHIGDQVYVEKGGEIIPKIVGVDMSFRSKADGVVEFISHCPECGTELIRKEG
EAQHFCPNEIGCPPQIKGRIEHFISRKAMNIDGLGPETIDALYNSHLIENYADLYDLTFS
QIVSLERMADKSANNAMASIEASLATPFEKVLFALGIRHVGETVAKKLARHFKNIDQLAA
ATFDELIAVNEIGEKIAIAIQSFFQEEKNRIIIERLKNVGIHFEIEVVENASNTLKGQTF
VISGVFEKVSRNELKELIEKNGGKNTGSISAKTNYLVAGENMGPAKLDKAQKLGVKIISE
DDFLTMIEN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggatataaaaaatagaattgacaaattggtgaaagaaataaactttcacaac
aacgcttattatgtcaaaagcgcacctgtaatttcagattttgaatttgaccaaatgctc
aaggaattggaacaacttgaacatgactatcctcaattcgcttcagccaatagccctaca
aaaagagttggtggagatatcacaaaaaaatttgaatctgtcacacatgaatttcctatg
ctttctttatctaacacctacagtgaagatgagataaaagattgggttgttagaattaag
aaactatcagaagaagaaattacatacgtctgcgaacttaaatatgatggtgtagcaata
ggaataagatacaaaaatggcgaattggaaagagcagtgacccgtggtgacggaactcaa
ggagaagatgtaactaccaatgtcaaaaccatcaaaactgttccgcttacactgcacact
gaaacacctgctgaatttgaaataagaggtgaaatatttttcccacttgaaaacttcagc
aaactaaataagttgagagcagaagccggagaagagttatatgcaaatcccagaaacaca
gccagtggaacacttaaatcccaagacagtaaaattgttgccgaaagaggattagactgc
tacttatacggagtatatggttatgacttaaactttacaagtcatagtgaagcagtcaaa
accgctggagaatggggatttaaaattcctgatagcaacaaaagaatgattgaaaactgt
aaaaccattgaagaaataatggattttatcagttattgggataaaaacagatttcaactt
ccttttgagattgacggagttgttattaaggttgataattatgatcaacaagaacaacta
ggcttcacagccaaaagtccaagatgggccattgcttacaaatttaaggcagaacaggta
agcacaagattaaatgaagtaacctatcaagttgggaggacgggagctatcacgccggta
gccaatcttgaacccgttttgttagcaggaacaacagtgaagagagcttcacttcataat
caagatcaaattgaaaagcttgacttacatattggagaccaggtttatgttgaaaaagga
ggagaaattatccctaagatagtgggagtagatatgtcctttaggtctaaggcagacgga
gtggtagaatttatttcacattgccctgaatgtggtactgaattgatacgaaaagaagga
gaagctcagcatttttgcccaaatgaaataggttgcccacctcaaattaaaggaagaatt
gagcatttcattagtagaaaggccatgaacattgatggtttgggaccagaaacaatagac
gccttatataacagtcatttaattgaaaactatgccgatttgtacgacttaacttttagt
caaatagtttctttagaaagaatggcggataagtcagctaataatgcaatggccagcatt
gaagcatctttggcaacaccttttgaaaaagtattatttgcattaggtataaggcacgtc
ggcgaaactgtagctaaaaaattagcaagacactttaaaaatattgatcaattagctgct
gcaacatttgatgaattaattgcagtcaatgaaattggtgagaaaatagccatagccatt
caatcattttttcaagaagagaaaaatagaatcattattgaaagattgaaaaatgttggt
attcactttgaaattgaagtagttgaaaatgcttcaaacacgcttaaagggcaaaccttt
gtaataagtggagtatttgaaaaagtgagtagaaatgagctaaaagagctgattgaaaaa
aatggaggcaaaaataccggttccatttcagccaaaacgaattatttagtagcaggagaa
aatatgggacctgctaaattggataaagcacagaaactaggagtaaaaattatctcagaa
gatgattttttaaccatgatagaaaattga
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