Carnobacterium sp. 17-4: CAR_c16400
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Entry
CAR_c16400 CDS
T01452
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crn
Carnobacterium sp. 17-4
Pathway
crn03030
DNA replication
crn03410
Base excision repair
crn03420
Nucleotide excision repair
crn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAR_c16400 (ligA)
03410 Base excision repair
CAR_c16400 (ligA)
03420 Nucleotide excision repair
CAR_c16400 (ligA)
03430 Mismatch repair
CAR_c16400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crn03032
]
CAR_c16400 (ligA)
03400 DNA repair and recombination proteins [BR:
crn03400
]
CAR_c16400 (ligA)
Enzymes [BR:
crn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAR_c16400 (ligA)
DNA replication proteins [BR:
crn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAR_c16400 (ligA)
DNA repair and recombination proteins [BR:
crn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAR_c16400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAR_c16400 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAR_c16400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAR_c16400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
RNA_ligase
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
AEB30298
UniProt:
F4BSM8
LinkDB
All DBs
Position
complement(1700106..1702043)
Genome browser
AA seq
645 aa
AA seq
DB search
MKDAPSIPDTDYDKLYNELVALEEAFPDLISNDSPTQRIGGTILPGFEKVVHEVPMLSLG
NAFNEGDLLDFDRRIKKITDQPFSYICELKIDGLAVSLTYEKGKLVRAATRGDGTVGENV
TQNIRTVKSVPLRLKNPYSIEVRGECYMPKDSFIKLNQEREENGEAIFANPRNAAAGGLR
NLDPKETAKRNLNTFLYTIGDFGELTAVSQEDALHQLDELGLRTNHDRRVFQTIEEVWAY
TQEFQEKRTALPYEIDGIVIKVNEFAVQEEVGFTVKAPRWAIAYKFPAEEAHTVIRDIEW
SVGRTGVVTPTAIMDPVQLAGTTVQRASLHNEDLIHERDIRLLDTVVVHKAGDIIPEVTR
VILDERPEDSQPYAIPTHCPACDSDLIHLEEEVALRCMNPKCPAQITEGLSHFVSRNAMN
IDGLGIRVLMQMFEKDMVHDVADLYTLTFDQLVTLDKIKEKSANNLLNAIDASRSNSLER
LLFGLGIRHVGAKAAKLIAERFETMEAVQQAEKDMIISIEGIGEIIAESVVAYFSLPEVN
ELIQELKNSQVNMNYLGKKKVEVATVDSYFNGKTVVLTGKLTHFTREEAKERIENLGGNV
TGSVSKKTDLVVAGEEAGSKLAKAESLNILVWDEDQLLETLEGEE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatgctccatctatacctgacacggattacgacaagttgtacaatgaactagta
gctttggaagaagcatttccggacttaatcagtaatgattctcccacacaacgcattgga
ggaaccatcctgcctggttttgaaaaagtggttcatgaagttcctatgttaagtcttgga
aatgcatttaacgaaggagacctacttgattttgatcgtcgtatcaaaaaaataacggat
caaccatttagctacatttgtgagctgaaaattgatggtttagccgtatcgttaacgtat
gaaaaaggaaagctggttcgtgcagccacacgtggagatggaactgtgggtgagaacgtg
actcaaaatattcgtaccgttaaatcggttccgttacgcttgaaaaatccttattctatt
gaagtgcgcggggaatgttacatgcccaaagattcctttattaaattgaatcaagaacgc
gaagaaaatggggaggcaatctttgcaaacccaagaaacgcagcagctggtgggttgcgt
aatttagatccaaaagaaacagctaaacgaaatttaaatacttttttatacacgattggt
gattttggtgaattaacagctgtaagccaagaagacgcactccatcaattagatgaattg
ggacttcgaacgaatcatgatcgcagagtgttccaaacaattgaagaagtatgggcatac
actcaagaatttcaagaaaaaagaactgctttgccttatgaaatcgatggtatcgtgatc
aaggtaaatgagtttgcagttcaagaagaagttggttttaccgttaaagctcctagatgg
gctattgcctataagtttccggcagaagaagctcatacagtgattcgcgatattgaatgg
tcagtcggtcgaacgggagttgtgacgccaacagctattatggatcctgttcaattagcg
ggcactacggttcagcgagcaagtctgcacaatgaagatttgatccatgaacgagatatc
cgcctattggacactgtagtcgttcataaagcaggagatatcattccagaagtcactcgt
gtcattttggatgaacgaccggaagacagccaaccttatgctattcctacgcactgtccg
gcttgtgacagcgatctgattcatttggaagaagaagttgctttacgctgcatgaatcct
aaatgtccggctcaaattacggaaggcttatctcattttgtttctcgaaacgcgatgaat
attgacggattaggcattagagtattaatgcaaatgtttgaaaaagatatggttcacgat
gtagcagatctttatacattaacgtttgatcaactggttacgttagataaaattaaagaa
aaatcagctaataatctactaaatgctatcgatgcaagtcgcagcaattcattagaaaga
ctgctctttggattaggtattcgtcatgtaggcgcaaaagcggctaaattaattgcagaa
cgttttgaaacaatggaagctgtgcagcaagcggaaaaagacatgattatttcaattgag
ggtatcggagaaattatcgctgaaagtgtcgtcgcgtatttcagtttaccagaagtgaat
gaactgattcaggaattaaaaaacagccaggtcaacatgaattatttagggaagaaaaaa
gtagaagtcgcaacagttgattcttattttaatgggaaaacagttgttttaacggggaaa
ttgacgcattttactcgtgaagaagctaaagaacgtattgaaaatcttggcggaaatgtg
actgggagcgtctctaagaaaactgatttggtcgttgcaggtgaagaagccggcagcaag
ttagcaaaagctgaatcattaaatattcttgtctgggatgaagatcagttgttggaaaca
ttagaaggagaggaataa
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