Citrobacter rodentium: ROD_23701
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Entry
ROD_23701 CDS
T01145
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cro
Citrobacter rodentium
Pathway
cro03030
DNA replication
cro03410
Base excision repair
cro03420
Nucleotide excision repair
cro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROD_23701 (ligA)
03410 Base excision repair
ROD_23701 (ligA)
03420 Nucleotide excision repair
ROD_23701 (ligA)
03430 Mismatch repair
ROD_23701 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cro03032
]
ROD_23701 (ligA)
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_23701 (ligA)
Enzymes [BR:
cro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ROD_23701 (ligA)
DNA replication proteins [BR:
cro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ROD_23701 (ligA)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ROD_23701 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROD_23701 (ligA)
MMR (mismatch excision repair)
DNA ligase
ROD_23701 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ROD_23701 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
RNA_ligase
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CBG89116
UniProt:
D2TSE9
LinkDB
All DBs
Position
complement(2490602..2492617)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDKLTWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPDTHL
GRLMQFKAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GYVARAPRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVFPAQCPVCGSDVERVEG
EAVTRCTGGLICAAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAFFGTLEALEA
ASIEELQKVPDVGIVVATHVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccagaggttcccgatgcggaatacgatcgtcttatgcgc
gaactgcgcgaactggaggcgcaacacccggaactgattacgcccgactccccgacccaa
cgggtaggggcggcgccgttaacctctttcagccagattcgccacgaagtgccgatgctg
tcgctggataacgttttcgatgaagagagctttctggcgtttaacaagcgcgtgcaggat
cgtttaaagagcagcgataagctgacctggtgctgcgagctgaagctggacggtctggcg
gttagtattctttatgaaaacggcgttctggtcagggccgcgacccgtggtgacggaact
accggcgaagacattaccgccaacgtgagaactatccgcgctattccgctgcggctgcat
ggcgagaacattccggcgcgtctggaagtgcgcggcgaggtctttttaccccaggccgga
tttgaaaaaattaacgaagaagcgcgtcgcaccggcggcaaggtctttgctaacccacgt
aatgcggcggccggttcgctgcgccagctcgatccgcgaatcacggcgaagcgaccgctg
actttcttctgctacggcattggcattctggaaggtggcgagctgccggatactcatctg
ggccgcctgatgcagtttaaggcctggggtctgccggtcagcaatcgcgtgacgctctgc
gactcgccggaagaggtgctggcgttctaccataaggtggaagaagaccgtccgacgctg
ggcttcgacattgacggcgtggtgatcaaggtcaactcgctggctcttcaggagcaactg
ggctacgtagcccgcgcgccgcgctgggcggtggcgtttaagtttccggcgcaggaacag
atgacctctgtccgcgacgtggagtttcaggtcgggcgcactggcgccattactcccgtc
gcgcgactggagccggtacaggtggcgggagtgctggtgagtaatgccacgctgcataac
gccgacgagattgaacgacttggcctgcgtatcggcgataaggtggtgattcgccgggcg
ggggatgtgatcccgcaggtggtgaacgtggtgctctccgagcgtccggcggaaacgcgc
ccggtggtctttccagcccagtgtccggtgtgtggttctgacgtggagcgcgtggagggc
gaagcggtgactcgctgcaccggcggcttaatctgcgcggcgcagcgtaaagagtcgctg
aagcacttcgtttcccgccgcgcgatggacgtcgacgggatgggcgataaaatcatcgac
cagctggttgagaaagagtatgtgcacacccctgcggatctgttcaggctgaccgcgggc
aaactgaccggactggatcgcatggggccgaagtcggcgcaaaacgtcgtggatgcgctg
gaaaaagcgaaagagacgacttttgcgcgcttcctgtatgcgctgggcatccgggaagtg
ggggaggctaccgctgcggggcttgccgcgttcttcggcactctggaagccctggaagcg
gcctccatcgaagagctgcaaaaggtgccggacgtgggcatcgtggtggcgacccatgtg
ttcaacttctttgccgaagagagcaaccgcgacgtcatcaggcaactgctggcggaaggc
gtgcactggcctgcgccggtggcgattaaggcggaagagatcgacagtcccttcgccgga
aagacggtggtattgaccggtagcctgagtcagatgtcacgggatgacgccaaagcgcgt
ctggtggcgctgggggcgaaagtggcgggcagcgtatctaagaaaaccgatctggtgatt
gccggtgaagcggccggttctaagcttgcgaaagcgcaggagctggggatcgaggtgatt
gacgaagcggaaatgctccgcctgctgggtgcctga
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integrated database retrieval system
