Crossiella sp. CA-258035: N8J89_34510
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Entry
N8J89_34510 CDS
T09057
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cros
Crossiella sp. CA-258035
Pathway
cros03030
DNA replication
cros03410
Base excision repair
cros03420
Nucleotide excision repair
cros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N8J89_34510 (ligA)
03410 Base excision repair
N8J89_34510 (ligA)
03420 Nucleotide excision repair
N8J89_34510 (ligA)
03430 Mismatch repair
N8J89_34510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cros03032
]
N8J89_34510 (ligA)
03400 DNA repair and recombination proteins [BR:
cros03400
]
N8J89_34510 (ligA)
Enzymes [BR:
cros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N8J89_34510 (ligA)
DNA replication proteins [BR:
cros03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N8J89_34510 (ligA)
DNA repair and recombination proteins [BR:
cros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N8J89_34510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N8J89_34510 (ligA)
MMR (mismatch excision repair)
DNA ligase
N8J89_34510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N8J89_34510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
zf-TFIIB
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
WHT18175
LinkDB
All DBs
Position
complement(7674701..7676842)
Genome browser
AA seq
713 aa
AA seq
DB search
MTRNDSSELDVTAAARQRHAELAQEITDHQYRYYVTSPVISDAEFDQLFRELQALEAEHP
ALVTPDSPTQRVSGSFATEFVPVDHLERMLSLDNAFNAEELQAWAERVEKEVGADAHFLC
ELKIDGLAVNLLYRDGRLERGLTRGDGRTGEDVTLNLRTLADVPARLVGTAELPVPELVE
IRGEVFFTLADFAELNAAQVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMICHGLGK
RAGFEPARQSDSYNALKAWGLRVSTHTRVLSTVDEVTAYITGWGERRHDAEHEIDGVVVK
VDEVTHQRRLGATSRAPRWAIAYKYPPEEVTTQLLDIRVNVGRTGRVTPFAVTEPVKVAG
SVVARATLHNANEVRRKGVLIGDRIVLRKAGDVIPEVLGPVVEARDGSEREFIMPTECPE
CGATLRPMKEADVDIRCPNAQFCPGQLRERLSYLAGRSALDIEVLGFEAAAALVASDVYT
NERDLFDLDADKLRQVPLFRTMAGGLSANGQKLLENLETVKTRPLWRILVALSIRHVGPK
AARDLARELGSIEVIAQATEEQLAAVDGVGPTIVQAVREWFEVDWHREVVDAWAAAGVRL
AEDRDESMPRTLAGLSIVVTGSLPGFSRDEAKEAILSRGGKAVGSVSKKTSFVVVGEAPG
SKYDKAVQLKVPVLDEDGFRVLLESGPEAAAEVATVGADGGAGDGDGDQGSAG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaggaacgacagcagtgagctagacgtcaccgcggcggcgcgccagcgccacgcg
gagctggcccaggagatcaccgaccaccagtaccggtactacgtgacctcgccggtgatc
tccgacgccgagttcgaccagctcttccgcgagctgcaagcgctggaggccgagcacccg
gccctggtcacccccgactcgccgacccagcgggtcagcggcagcttcgccaccgagttc
gtcccggtggaccacctggagcggatgctcagcctggacaacgcgttcaacgccgaggag
ctccaggcctgggccgagcgggtggagaaggaagtcggcgcggacgcgcacttcctgtgc
gagctgaagatcgacggcctcgcggtcaacctgctctaccgggacgggcggctggaacgc
ggcctgaccaggggcgacggccgcaccggcgaggacgtcacgctcaacctgcgcaccctg
gccgacgtgcccgcgcgcctggtcggcacggcggagctcccggtgccggagttggtggag
atccgcggcgaggtcttcttcaccctcgctgacttcgccgagctgaacgcggcccaggtg
gaggcgggcaagccgccgttcgccaacccgcgcaacgcggcggccggatcgttgcggcag
aaggatcccaaggtcaccgcgagccgcccgctgcggatgatctgccacggcctcggcaag
cgggccggcttcgaaccggcccggcagtccgactcctacaacgcgctcaaggcctggggc
ctgcgggtctccacgcacaccagggtgctgtccactgtggacgaggtcaccgcctacatc
accggctggggcgagcgcaggcacgacgccgagcacgagatcgacggcgtggtggtcaag
gtggacgaggtcacccaccagcgccgcctcggcgccacctcgcgcgcgccgcggtgggcg
atcgcctacaagtacccgccggaggaggtcaccacccagctgctggacatccgggtcaac
gtgggccgcaccggccgggtcaccccgttcgcggtgaccgagccggtcaaggtggccggg
tcggtggtcgcgcgggccaccctgcacaacgccaacgaggtccggcgcaagggcgtgctg
atcggcgaccggatcgtgctgcgcaaggcgggcgacgtgatccccgaggtgctcggcccg
gtggtggaggcccgcgacggcagcgagcgcgagttcatcatgcccaccgagtgcccggag
tgcggggccacgctgcggccgatgaaggaggcggatgtcgacatccgctgcccgaacgcc
cagttctgccccgggcagctgcgcgagcggctgtcctacctggccggccggtccgcgctg
gacatcgaggtgctcggcttcgaggccgccgccgccctggtcgcctccgacgtctacacc
aacgaacgcgacctgttcgacctggacgcggacaagctgcgccaggtgccgctgttccgc
accatggccggcgggctgtccgcgaacgggcagaagctgctggagaacctggagacggtc
aagacccggccgctgtggcggatcctggtcgcgctgtccatccggcacgtcggccccaag
gcggccagggacctggcccgcgagctgggctcgatcgaggtgatcgcgcaggccaccgag
gagcagctggccgcggtcgacggcgtcgggcccaccatcgtgcaagccgtgcgcgagtgg
ttcgaggtggactggcaccgcgaggtggtcgacgcctgggccgcggccggggtgcggctg
gccgaggaccgcgacgagtcgatgccgcgcacgctggccggactgtccattgtggtcacc
ggcagcctgcccggcttctccagggacgaggccaaggaggccatcctgtccaggggtggc
aaggcggtcggctcggtgtcgaagaaaaccagttttgtggtggtcggcgaagcgccagga
tccaagtacgacaaggcggtgcagctgaaggtgccggtcctggacgaggacgggttccgg
gtgctgctggagtccggtccggaggcagccgccgaggtggccacggtcggcgcggacggg
ggagccggagatggcgacggagatcagggttcggcgggctga
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