Caenorhabditis remanei (nematode): GCK72_002809
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Entry
GCK72_002809 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14314
nuclear pore complex protein Nup210
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_002809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_002809
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
GCK72_002809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP210_Ig
Ig_NUP210_1st
Ig_NUP210_2nd
Ig_NUP210_13th
Ig_NUP210_4th
Ig_NUP210_15th
Ig_NUP210_5th
Ig_NUP210_7th
Ig_NUP210_3rd
Big_2
Ig_NUP210_6th
Ig_NUP210_9th
Ig_NUP210_16th
Ig_NUP210_8th
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-GeneID:
9806302
NCBI-ProteinID:
XP_003099730
UniProt:
A0A6A5HTT7
E3MVW0
LinkDB
All DBs
Position
I:<12509527..>12516574
Genome browser
AA seq
1848 aa
AA seq
DB search
MILLRLLFALAIAQVSTAYRLNVPRVLLPYHPTVPVSFVLEVTHPIGGCFHWRSTRPDIV
SVKSIDTTGAGCSDRAEIRSVAKPGSVGSSELSAVIFAEDKGSGTTLSCGVTVDEIATIS
IETTTKVLFVDAAPARMTVDAFNADGDRFSTLSELALEWELSSTSSNKAKPLRIVPFEQS
TYEAPSEIVKLEKNRKKGYLILIEGVGTGTATLTTKFSDSYLQKVAAHNVELAVVANLLL
VPSQDIYMPVHSVIPFQVLIVKQRGTEIVTMPNPSYELVIDGGNVASLDKKTSSVRALTT
GNSAVHLLSSHVDVRAKAGLRPPSTVIHVVDPESVQWHVSGENWMLETGKQYTINVELLD
EHGNVMFVADNSRFDTHVDENLLRVDYKSQNGTWLLVTPLKPAKTTLRTKFVSIIDANGK
IIAQSGKIGGEQRATLVDPVKIVPPVIYLPYVSEKRAQIDLTATGGSGVFDWSSEDGHIA
TVELATGRLTANSLGNTVVVATDKRNDQLRDRADVHVLEVSGIGFGETVRETFVGENLEL
NLKFTGVTSDGELVEMSDCRNIRASVQVSDNSLLRHESNEESHLPKVGTGCGTVSLKGLS
SGDARVTVSYMGHKASIDVAVYEKLKISEDSSAIALGSSHPLVISGGPRPWILDPANFYK
TRENQEKSSQLQVTFENEKVIFKCSSTEGTEAVRVRVGNQKSSTLPLPIHSTVTVSICCA
KPTRLEIFDNKPRPAKCPLNVHSMLIQTDAELVLRGSGACNGVATPLASINGLSTKWQTS
DSSLVKIKKQGIQSDVTTGKKEGVATIEAHAGSLTAKYEITVSNGLTVEPSRLVLWNEAV
SKGTFTISGGSGHFHVDNLPTAGAPVSVALRSRSLSVTPKNNGQISLRIADSCLIGQHAD
AEVRIADIHSLAIDAPQFVEIGQEVEVEILAQDETGASFEKEHRPLADAQLDASNQHVIL
KKIDGLRYTLRANSIGTVSLSATSKSSSGRVLSSRPHNVQIFSPIFLQPKRLTLIPDAKF
QLEVVGGPQPTPPLDFSLNNSMIASIEPNALITSSELGWTSITGTVRVGDGHVTKDTVIL
RVASLGGIVLSASSQKVETGGRVNLRLRGIVAGAEDEEPFAFGGAIYPFKVTWSVSDPSV
LSTTHPLGGDVVEPSENQFAIWFDAIRGGSVTVRAVVELNERARKHFVGQRKSFTTEITV
TVEDALSLIQPEMAVNSVRVAPNSQLKMVTVWSQAAFSVPSDFSTRVSITSDGFLRTNGK
EGSAVVAVRKLNSPDNETVLIPVTVSRVASLDVHPTSELRSAFENSPIVHLPVGAQIQLN
VIPRDIRGRRLSAASNSINFRPHRFDLTDIIATNNNQTLTITLKNAGDTVLRIGDAANPS
IATFIRLSASESILPRVAHKYANDLVVSDVICLQSNILSEDGSRWSSQSSSEGRINWLDE
HQGVAQLAKAGNTFVRLHTSQQTIHSKISVLLPTSLRFPEQKPDFVSNDEHAVFMIPVTA
ITNNTSKSKISSIYGDCTHEQIRAFDTISAPFECQVAFVRKSKVISAVNWLTTSAVFSPS
FGYGCEIRRLDSSISTSSIVIPDELLKDQFDARVTAKWASDGTILVADAQLEVPFHFAFN
VEEKELVFSNMNQIDAALSVWVPSYDAKNIVVSGCEGDIVNVAKTSKITDKHSAKGNLFY
NIHLNVKSAALFTEHAKKCQITVENTLTGQVVRVPVTVQLLDETAKQVFNALESRGIIDV
LLILAQQYSHIIPTLLWTCLVGIIILAVAIYVKMNIFDKSGSFGDNTLNNSTHQTSMASS
LNSTNVSLREPVFRSTPIAGSPQVALPTARERLRNQMGSSGDNRLWSY
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atgattctgcttcgattactctttgcacttgccattgcgcaagtctccacagcctaccgt
ctcaatgtcccacgagtcttgttaccgtaccacccgactgtccccgtttcctttgtactc
gaagtaactcatccaattggaggatgttttcactggagatcaactcgtccagatatagtt
tcggtgaaaagtatagacacaactggagccggatgctcggatcgggctgaaattcgttca
gttgctaagccaggaagtgtcggaagttctgaattgtctgctgtcatttttgcagaggat
aaaggatctggtactacattgagttgcggagttactgtcgatgaaatagccacgattagt
atcgaaacaactacaaaagtactctttgtggacgccgctcccgctcggatgactgttgac
gccttcaatgcagacggcgaccgattctcaactctcagcgaactcgctctggaatgggaa
ctctcttcaacatcatccaacaaagcgaaaccactccgaatcgtaccattcgaacagtca
acttatgaagctccatcggaaattgtgaagttggagaagaatagaaagaaaggatatttg
attctcatcgagggagttggcacgggaaccgccactttgactacgaagttcagcgattcg
tacttgcagaaagtagccgctcacaatgtggaacttgccgtcgtcgctaacctccttctc
gttccatcgcaagacatctatatgccagttcactctgttatcccattccaagttcttatt
gtgaaacaacgtggaactgaaatcgtcaccatgccaaatccatcctacgaactcgtgatt
gacggtggtaatgtcgcgtcactcgacaagaaaacttcatcagttagagctctgacaaca
ggaaactccgcagtgcaccttctcagtagccacgtcgacgttcgcgcgaaagctggtctc
cgcccaccatcaactgtgattcacgtcgtcgaccctgaatccgtccaatggcacgtttca
ggcgagaattggatgcttgagacaggaaaacagtatacaatcaatgtggaattgcttgat
gagcatggaaatgtcatgtttgtagctgataactcccgattcgacactcatgttgacgaa
aatctcctccgcgtggactacaaatcacagaatggcacatggctcctcgttacccctctg
aaaccagctaagaccactctccgcacaaaattcgtttcgattatcgatgccaacggaaaa
atcattgctcaaagtggaaaaatcggtggagaacagagagcaactctcgtcgacccggtg
aaaatcgttccaccagtcatttatcttccatatgtctccgagaaaagagcacaaatcgat
ttaacagcgactggaggaagcggcgtgttcgattggtcatctgaagatggacatattgca
actgttgagttggctactggacgattgactgcgaattcgctgggaaacactgttgttgtt
gctactgacaagagaaatgatcaattgagagatagagccgatgtacatgttctcgaagtg
tctggaattggttttggagagactgtcagagagacttttgtaggagagaatctggaattg
aatctgaaattcactggtgtaacttctgatggagaactcgttgaaatgtctgattgccgt
aatatccgagcatctgttcaagtatctgacaactctcttctccgccacgaatcaaatgaa
gaatctcatcttccaaaggtcggaactggatgtggaactgtttctctcaaaggactttct
tctggagatgcgcgtgtcactgtcagttatatgggacacaaagcaagtatcgatgtagca
gtttacgagaaactcaaaatatccgaagactcgtcggctatcgctcttggaagctctcac
ccactcgtgatttctggcggaccaagaccatggattctggatccggcgaatttctacaaa
acaagagaaaaccaagagaaatcctcgcaacttcaagtgacattcgagaatgagaaggtc
attttcaagtgtagctcaacggaaggaacagaagccgtacgtgttcgtgttggaaatcag
aaatcgtcgactcttcctctcccaatccattccaccgtcactgtttccatctgttgtgcc
aaaccaactcgtctcgagattttcgacaataagccacgcccagcgaagtgtccactgaat
gttcactcaatgctcattcaaactgacgctgaactcgttcttcgtggatcgggagcttgt
aatggtgtcgccactccactcgcctcaattaacggtctctcgacgaaatggcaaacttct
gatagctctcttgttaaaatcaagaagcaaggaattcaaagtgatgtgactactggaaag
aaagaaggagttgcaacaatcgaagcacacgctggttcactcaccgccaagtacgaaatc
accgtttccaatgggttgactgttgaaccatctcgtctcgttctctggaatgaagccgtc
tccaaaggaacattcacaatttctggtggttctggacacttccacgtagacaatctgcca
actgccggtgctccagtatctgttgctctccggtcgagaagtttgtcggtcacaccgaag
aataacggacagattagtcttcgtattgcggattcttgtttgattggacaacacgctgat
gctgaagttagaattgcagatattcattctttggcgattgatgcaccacaatttgtagaa
attggacaagaagtcgaagttgaaattcttgctcaagatgaaaccggagcctcattcgaa
aaagagcaccgcccacttgctgatgcacaactcgatgccagtaatcaacatgtcattctc
aagaaaatcgacggacttcgctatacactccgcgctaattccatcggaaccgtttccttg
tcagccacttccaaatcatcttccggacgtgttctctcttctcgaccacacaatgttcag
atcttctctccgattttcttgcaaccaaaacgactaactctaattccggatgccaaattc
cagttggaagttgtcggaggacctcaaccaacacctccactcgatttctcgttgaacaac
tcaatgattgcatcaattgaaccgaatgcgttgatcacttcatcagaactcggatggact
tcaatcactggaactgttcgtgttggtgatggtcatgttacaaaagataccgtaatcctt
cgtgttgcttcactcggtggaattgttctatctgcttcgagtcagaaggtcgagactgga
ggacgagttaatttgagattgagaggaattgtcgctggcgcagaagacgaggagccattc
gctttcggaggagcaatctatccgttcaaagtcacttggagtgtatctgacccatctgtt
ctgtctacaactcacccacttggtggagatgtcgttgaaccatccgagaatcagtttgct
atttggtttgatgcgattcgcggaggatcagttacagtcagagctgtcgttgagttgaat
gagagagctagaaaacatttcgtcggacagagaaaaagtttcacgacagagattacggta
actgttgaagatgctctctcgttgattcaaccagaaatggcagtcaatagtgttcgagta
gcaccgaattcccagttgaaaatggtcactgtttggtctcaagccgctttctccgtccca
tctgacttctccactcgtgtttctatcacttctgatggcttccttagaacgaatggaaaa
gaaggatcggcggtggtagcagtcagaaaactgaacagtccggataatgagacagtactg
attccagttacagtctcccgtgtcgcttccctcgacgtccatccgacttctgaactccga
agtgcatttgaaaactcgccgatcgtccatctcccagttggagctcaaatccaactcaac
gtcatcccacgtgacattcgaggacgtcgtctctctgctgcttccaatagtatcaatttc
agacctcacagattcgacttgactgatatcattgccaccaacaataatcaaacgctgaca
atcactctgaaaaatgctggagacaccgttcttcgaattggagatgcggccaacccgagc
atcgcaacattcatccgactctctgcttctgaatctattctacctcgtgtcgctcacaaa
tacgccaatgatctcgtcgtgtctgacgtcatctgccttcaatccaacattctttcggaa
gatggctcccgctggtcatctcagagctcaagcgaaggaagaatcaactggttggatgag
catcaaggagtggctcaactcgctaaggctggaaatacatttgtcagattgcacactagt
cagcagacaattcactcgaagatctctgtcttgttgccaacttctctccgattcccagaa
cagaagccagatttcgtcagtaatgatgagcacgcggtattcatgattccagtcactgct
atcaccaacaacacttccaaatccaagatctcatcgatctacggagactgcacacatgaa
cagattcgtgcattcgacaccatcagtgctccattcgagtgtcaagttgcttttgtccga
aagtcaaaagtgatctctgcagtcaactggctgacaacttctgccgtattcagtccatct
ttcggttacggatgtgagattcgtcgacttgactcaagtatatcaacttcgtcgattgtt
attccggatgagcttctgaaggatcagttcgatgcgagagtcacagcgaaatgggcttca
gatggaacgattctggtggctgatgctcaattggaggttccattccactttgcattcaat
gtcgaagagaaagagctcgtcttctcaaacatgaatcaaatcgacgctgctctttccgtc
tgggttccttcctacgacgctaagaatatcgttgtatctggatgtgagggagatattgtg
aatgttgcaaaaacatcgaaaatcactgataagcattcagcaaagggcaatcttttctac
aatattcatctcaatgtgaaatctgcggcactcttcacggaacatgcgaagaaatgtcaa
attactgttgagaatactttgactggtcaggttgttagagttccagtcaccgtgcagctg
ctcgatgagaccgctaagcaggttttcaatgctctcgaaagtcgtggaatcattgacgtc
cttctgattcttgctcaacaatattctcatatcatcccaactcttctgtggacttgtctc
gttggaattatcattctcgccgtggcaatctacgtgaaaatgaacattttcgataaatct
ggatcgtttggagataatactctgaataactcgacacatcagacatccatggctagctcg
ctcaacagcacaaatgtgagcctccgtgaaccagtattccgttcgacgccaatcgccggt
tccccacaagtcgctcttccaacagcccgtgaacgtcttcgtaatcaaatgggatccagt
ggagacaacagactttggagctactga
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