Caenorhabditis remanei (nematode): GCK72_009004
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Entry
GCK72_009004 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCK72_009004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crq03400
]
GCK72_009004
Enzymes [BR:
crq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCK72_009004
DNA repair and recombination proteins [BR:
crq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GCK72_009004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
mRNA_cap_enzyme
DUF6306
BRCT
Motif
Other DBs
NCBI-GeneID:
9805092
NCBI-ProteinID:
XP_053586738
LinkDB
All DBs
Position
III:complement(4187166..4192078)
Genome browser
AA seq
741 aa
AA seq
DB search
MAADVLFDDIVGVFNKIGRTSNLKSKQANFQKSFDAWKQGCESPTEMTAILRFFVSDYER
FRKFDMGPTKLASFLAKTFHDVRADYVAEISKDSTKAARQLAEKISEEYRTENDESAVIK
VSDLNEFLDFLAEGPMDDQKKRDRMSKLVRTCSEDELEWIFNIILRNVESALGAPSNKIL
DWVSPSACAIWDQTHDLKAVLKGKLVEKEESGTGEEASDGDEHLFKIWTPMLLQKQKRGD
WYASIEKFGGPKFFLQVKFDGENVLLHKKGNEYRWFTRNNNDFSKEYGDSSMAIGKLSSR
IHSFFNKECESAIFNCELMLWDKKTKRLCRHNDASTTSDAQVLSFRHVKPDDNQQLTVVL
FDLLYLNGKPLFGAPLHQRLEMLKIAPLKKEREDTIFVAKYEEASRKEEIQKFFEVAMQN
NEEGIVVKRADSVYVKGQRSAANGWFKLKPSASKDCDLDLALVAIHPRAGRNGKTLYRFA
AFDEKSGKFKLCLGCSYGLTRETHEAIGFECGQLLEEAPEELTFYGKRPNRISKGDGGYI
DFERWQVIKITSNGVRNGKLVDPVMREWRVDKPVDQINTWEEFSDYATKVQDCKLGDNVG
DSDDEESEEKKPDPLKVEKITRKAIHQTAPVRLKRAKLESSLSGVEVAVLQGTSETIRRK
CEEILKHFDAVVVKGITPSTQLCIATAPKPTHPKTAQAIAANTCTVLKPAWLERCNTDDL
IQPWTDSEVFHVVAGGFQIQN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgacgtgctcttcgacgacatcgtcggcgtcttcaacaaaataggaaggact
tcgaatctgaaatcaaaacaggcgaattttcagaagagtttcgacgcgtggaagcaagga
tgtgaatctccgactgaaatgacagcgattcttcgattttttgtatccgattacgaaaga
ttccgaaaattcgacatgggaccaacaaaactagcgagttttctagccaagacattccat
gacgtcagagcagattacgtggcagaaatctcaaaagattcgacgaaagcggcacgccag
ctggcggagaaaatttcagaagagtatcgaactgaaaatgatgagagtgcagttataaaa
gtgtcggatctcaacgagtttctggattttttggcggaaggaccgatggatgatcagaaa
aagcgcgacagaatgtcaaaactagtgagaacgtgttcggaagacgagttggaatggatt
ttcaacataattcttcgaaatgttgaatcggctctcggcgctccaagcaacaaaattctc
gattgggtttccccatcagcttgtgcgatatgggatcagactcatgatttgaaagcggtt
ttaaaggggaaattagtggaaaaagaggaatctggaactggggaagaggcgtcagatgga
gatgagcatttattcaaaatatggacaccaatgttgcttcagaaacagaagaggggtgat
tggtatgctagtatagaaaaattcggcggtcccaagttcttccttcaagtgaaattcgat
ggggagaatgtgttgttgcataagaagggcaacgagtatcgatggtttacaaggaataac
aatgatttttcaaaagaatacggtgactcctcaatggcaatcggaaaactctccagtcgt
attcactcatttttcaataaagaatgcgaatcggcgattttcaattgtgaattaatgttg
tgggataagaaaactaaaaggctttgccgccacaacgacgcgtccaccacatccgacgcc
caagtgctctccttcagacacgtcaaaccagatgataatcaacaattaaccgttgtccta
ttcgatttactctatctgaatggcaagcctcttttcggcgctccacttcatcaaagactc
gaaatgctcaaaattgcgccgctgaaaaaagagcgagaggatacgatttttgtggcaaaa
tatgaggaggctagtaggaaagaagaaatccagaaattcttcgaagtcgccatgcaaaat
aacgaggagggaatagtggtgaagcgggcggatagtgtctatgtgaagggtcaacggagc
gcggcgaacggatggttcaagctgaaaccatctgcatcaaaagactgtgatctggatttg
gcgctggttgcgattcatccgagagctggaagaaatggaaaaacgctttatcgattcgcg
gcgttcgatgagaaatcggggaaattcaagctttgtttggggtgttcttatggattaaca
cgggagactcatgaagcgattggatttgaatgcggacaacttctggaagaagcgccggaa
gagctcacattctatgggaaacgtccgaatagaattagcaagggtgatggtggatatata
gatttcgaacgctggcaagtcataaaaatcacatcgaatggagtgagaaatgggaaattg
gtggatccggtgatgagagagtggagagtggacaagccggtagatcagattaacacgtgg
gaagagttctcggattatgcgacgaaagtgcaagactgcaaactgggggataacgtggga
gatagtgatgatgaagagagcgaagagaagaaaccggaccccctgaaagtggagaaaatc
actcggaaagctatacatcaaacagcgcctgtccgactgaaacgcgcgaaactggaatcc
agcttgtctggtgtcgaagtcgctgtccttcaaggcacttctgagacgattcgacgaaag
tgtgaagagattctgaaacatttcgatgcggtggtagtgaaggggataacgccctctacc
caactatgcatagctactgctccaaaaccaacccaccccaaaaccgcccaagcgattgcc
gccaacacatgtactgtcctaaaacccgcctggctcgaacgctgcaacacagatgacctc
attcagccgtggacggattctgaagtattccacgtcgttgccggaggattccagattcaa
aattaa
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