Chromohalobacter israelensis: Csal_0703
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Entry
Csal_0703 CDS
T00347
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csa
Chromohalobacter israelensis
Pathway
csa03030
DNA replication
csa03410
Base excision repair
csa03420
Nucleotide excision repair
csa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Csal_0703
03410 Base excision repair
Csal_0703
03420 Nucleotide excision repair
Csal_0703
03430 Mismatch repair
Csal_0703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csa03032
]
Csal_0703
03400 DNA repair and recombination proteins [BR:
csa03400
]
Csal_0703
Enzymes [BR:
csa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Csal_0703
DNA replication proteins [BR:
csa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Csal_0703
DNA repair and recombination proteins [BR:
csa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Csal_0703
NER (nucleotide excision repair)
GGR (global genome repair) factors
Csal_0703
MMR (mismatch excision repair)
DNA ligase
Csal_0703
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Csal_0703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
RUBY_RBDX
5_3_exonuc
Big_3
Motif
Other DBs
NCBI-ProteinID:
ABE58064
UniProt:
Q1QZP4
LinkDB
All DBs
Position
complement(789352..791427)
Genome browser
AA seq
691 aa
AA seq
DB search
MSQIPQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELKTPD
SPTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLECDGDTLAFCCEPK
LDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVY
MRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDD
AHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLR
DQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVAN
ATLHNMDEIERLGVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEMPEHCPVCGSQT
ERLEGEVAARCSGGLFCPAQRKEALKHFASRRALDIDGLGEKLIDLLVEREWVKTPADLF
RLEAERLAELPRLAEKSANNLVNALEAAKRTTLARFIYAIGIREVGEATAASLARHFGSL
QALSEASLEALEAVEDVGPVVARHIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPL
AGQTWVLTGTLESMTRDDGKARLQALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVE
VIDEREFLQRLAHWESASSEDAQPTAPEDTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagattccccaagcggtccgcgagcgggccgacaccctgcaccagcagttggac
gacgccaactaccagtactacgtcgaggacgatccccgcatcaccgacgcggagtacgat
gccctgctgcgcgagctgcagtcactggaggccgagcaccccgagctgaagacgccggat
tcccccacgcagcgggtcggggcggcccccgccgagcgtttcgaggaagtgacccatgcc
gtgcccatgctgtcgctggacaacgccttcgacgacgcggagctggcggccttcgtcaag
cgcgtcgcggacaagctcgagtgcgacggcgacacgctcgcgttttgctgcgaacccaag
ctcgacggcctggcggtggcgctggtctacgagaacggacgactggtccagggcgccacg
cgcggcgacgggcgtaccggcgaggatgtcacgctcaatctgcgcaccatccgctcgatc
ccgctcaagctgcgcggcgactcgattccgccgctgatcgaggtacgcggcgaggtctac
atgcgccactcggggttcgaggcgctcaacgatcgcgcccgcgaaaacggcgacaaggtg
ttcgccaacccgcgcaacgccgccgccggtagcctgcgccagctggattcctcgatcgcc
gccgcgcggccgctggagttctgcgcctatcaggtcgcccggctcgaaggcgaggatgac
gcacactcgcattccgattatctcaagcgcctgcggacgctgggctttcgcaccagcccg
ctgctcgacgtggtcaagggcgagcgcggcgtgatcgacttctgccaccgcctgggcgaa
cagcgcaacggactcgattacgacatcgacggcgccgtgatcaaggtcgacagcctgcgc
gatcagcgcgaactgggcttcgtctcgcgggcgccgcgctgggccatcgcctacaagtac
cccgctcaggagcagaccaccacgctcaacgacgtggtcttccaggtgggccgtgtcggc
acgctgacgccggtggccaagctcgagccggtccaggtggccggtgtcaccgtcgccaac
gccaccttgcacaacatggacgagatcgaacgcctgggcgtgcgcatcggcgataccgtc
atcgtgcggcgcgccggcgacgtcatcccccagatcgtgggggtcgtcgagtcgcagcga
ccggccacgacacgcgccatcgagatgcccgagcactgcccggtgtgcggctcgcagacc
gagcgcctcgaaggcgaggtcgcggcgcgctgctccggcgggctgttctgcccggcccag
cgcaaggaggcgctgaagcacttcgccagccgccgcgcgctggatatcgacggcctgggc
gagaagttgatcgacctgctggtcgagcgcgaatgggtcaagacaccggcggacctgttc
cggctcgaggccgagcggcttgccgaactgccccgattggcggaaaagtccgccaacaac
ctggtcaacgcgctggaagccgccaagcgcaccaccctggcgcgcttcatctacgccatc
ggcatccgtgaagtgggcgaggccaccgccgcgagcctggcacgccacttcggctcgctg
caggccttgtcggaggcgtcgctggaggcgctggaagcggtcgaggacgtggggccagtg
gtcgcccggcatatccacaccttcttccgccagccccacaaccaggaaacgctcgaggac
ctgcagggggtcggcgtcacctgggaagaggtcgagatcgccggccgtccccagccgctc
gccggccagacctgggtgctgaccggtaccctggagagcatgacccgtgacgacggcaag
gcgcgcctgcaggcgctcggcgccaaggtctcgggcagcgtctccaagaagaccgccggc
gtggtcgccggagaggccgccggaagcaagctggagaaggcccagaacctgggcgtggag
gtcatcgacgagcgcgagttcctgcagcgcctggcgcactgggaaagcgcctcctcggaa
gacgcccagccaacagccccggaggacacaccatga
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