Castanea sativa (European chestnut): 142614088
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Entry
142614088 CDS
T11266
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142614088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142614088
Spliceosome [BR:
csaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142614088
Complex C
U5 SnRNP specific factors
142614088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
142614088
NCBI-ProteinID:
XP_075642750
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All DBs
Position
1:35965008..35972201
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AA seq
989 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDREDEDEDLTDRPIEEEASDGEDAAAASNGWITASND
IDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIVKPVRNIKFEVGVKDSS
MYVPTQFLVGLMSNPTLVRNVALVGHLQHGKTVFMDMLIEQTHHMSTFDANSEKHLRYTD
TRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVINSNI
VAATNNTGNVPVIDPAAGNVCFASGTAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWGD
MYYHPDARVFRKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLIELGVTLPNA
AYKLNVRPLLRLACSSVFGNSSGFTDMLVQHIPSPKASATRKVDHIYTGPKDSMIYKAMK
NCDPEGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIRTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARDRTPIAEAPAGSWVLIEGVDASIMKTATLCDEDVARYEDIYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLPEDIENGA
VSIDWNRKTIGEFFEKSYGWDVLASRSIWAFGPDKQGPNILLDDTLSGEVDKNLLNAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPMYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEGMMVELAQQSADLHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttatatgacgagtttgggaactatattggacctgaaatcgagtctgac
agagagagtgacagagaggatgaagacgaagatcttacagacaggcctattgaagaggag
gcatcggatggtgaggatgcagctgctgcttcaaatggttggataacagcctcgaatgat
attgatatggataaccagattgtccttgctgaggacaaaaagtactacccaactgccgaa
gaggtttatggtgaagatgttgaaacgttggtgatggacgaagatgagcaaccattggag
caaccaatagtcaaacctgttaggaatatcaagtttgaggttggtgtgaaggattcttca
atgtatgtcccaacacaatttcttgttggtctcatgtcgaatcccactctggttcgaaat
gttgcccttgttgggcaccttcagcatggcaaaactgtcttcatggatatgttgattgag
caaacccaccatatgtccacatttgatgcaaatagtgagaagcatttgaggtacacagat
acaaggattgatgaacaagagagaaggatatcaattaaggcaattccaatgtcccttgtt
cttgaagatagcaattcaaaatcgtatctgtgtaacatcatggacacccctgggcatgtt
aatttttccgatgaaatgactgctgctctcagacttgccgatggtgctgtattaattgtg
gatgctgctgaaggagtaatggtaaatacagagagggctatacgccatgcaatccaagat
cgcctacctattgtagttgtaattaataaggttgacaggctgataacagaacttaagctg
cccccaaaggatgcttaccataagctaaggcatactctggaagtcattaatagcaacata
gttgctgccactaataacactggcaatgtcccagttatagatccagctgctggaaatgtt
tgttttgcaagtggtacagcaggatggtccttcactttgcaatcatttgcaaaactgtat
gtcaaactccatgggatcccatttgatgctgataagtttgcgtctcgactttggggagat
atgtattatcatccagatgccagggttttcagaaagaaaccccctgccagtggaggggaa
agatcatttgtccagtttgtgctagaacccctttacaaaatatacagccaagtgattggt
gaacataaaaagagtgtggaagctactcttatagaacttggtgtgactcttcctaatgcg
gcttacaaactgaatgtcaggcctttgctgaggctggcttgtagctcagtttttggtaat
tcctcaggctttactgatatgctggttcagcatataccttcccccaaagcttctgcaaca
aggaaggttgatcatatatatactggcccaaaagactccatgatctataaggccatgaag
aattgtgatcctgaaggccccttaatggttaatgtgaccaagctgtatcccaagtcagac
tgtagtgtatttgatgcatttggtagggtttatagtggaaggattaggacagggcagact
gtacgagtattgggagaaggatattctccagatgacgaggaggacatgaccgtaaaagaa
gtaacaaaattatgggtttatcaagctcgagataggacacccatagctgaggctcctgct
ggttcttgggttctcattgaaggtgtagatgcttccatcatgaaaactgctacgctttgt
gatgaggatgttgcacgctatgaggacatctacatattccggcctctccaattcaacact
cttccagtggtgaaaacagctactgagcctttgaatccaagtgagttgcctaaaatggtt
gagggtcttaggaagatcagcaagagctatcctctagccattaccaaagttgaggagtct
ggagagcacactattttaggtacaggagagttgtacttggattcaatcatgaaggacctt
agagagctctattctgaagtagaagtcaaggtagcagatcctgttgtttcattctgtgaa
actgtggtggagtcttcatcaatgaaatgttttgctgaaacaccaaacaaaaagaacaaa
ataaccatgatcgcagagcctttggagagaggactaccagaggacattgagaatggtgct
gtaagcattgattggaatcggaagacaattggtgaattctttgagaagagttatgggtgg
gatgtgcttgcatcacggtccatatgggcatttggacctgataagcaggggcctaacatt
ctactagatgacacgctctcaggtgaagttgacaagaacttgctgaatgctgtcaaggat
tccattgttcagggatttcaatggggtgctcgagaaggacccctctgtgatgaacccatc
aggaatgttaagttcaaaatagttgatgccaggattgcacctgagccactgcatcgggga
tctggtcaaatcattcctactgctcggcgtgtggcctactcagctttccttatggcaacc
ccaaggcttatggaaccaatgtattatgtggagatacaaacaccaatcgattgtgtctct
gcaatctatacggtcttatctcgcaggcgtggacatgtaacagctgatgttcctcaacca
gggaccccagcttatattgttaaggcatttttacctgtcatagaatcattcggttttgag
acagacttgagataccatactcaaggacaagcattttgcctctcagtgtttgatcattgg
gctattgttcctggggaccctcttgacaagagtattgttctgcggccacttgaaccggct
ccaattcagcatcttgctcgtgaatttatggtgaagacaaggcgtagaaagggaatgagt
gaggatgtgagcattaacaagttctttgatgagggcatgatggttgagctggctcagcaa
tcagctgatcttcatcagcaaatgatgtga
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