Castanea sativa (European chestnut): 142626702
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Entry
142626702 CDS
T11266
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142626702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142626702
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142626702
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA
SMC_N
AAA_23
Arf
ORC-CDC6-like
AAA_30
Zeta_toxin
nSTAND3
AAA_7
Motif
Other DBs
NCBI-GeneID:
142626702
NCBI-ProteinID:
XP_075656530
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Position
3:5348752..5353564
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AA seq
330 aa
AA seq
DB search
MGLKQSEKLEPMIEINGLKFTYPGIDGHPPPGSTPLIEDFSLSLHSGDRCLLVGSNGAGK
TTILKILGGKHMVEPHMVRILGRSAFHDTALTSSGDLSYLGGEWKREVAFAGFEVAIQMD
VSAEKMIYGVAGIDPQRRDELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD
EITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM
DKVKEISNLSLMRTVESWLRKERDEERKRRKERKACGLPEFEKQIEGSRVTGDPARAATR
ALNNGWAAGRLNSTIAGEENFVLSSNRVLR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaagcaaagtgaaaagttagagccaatgatagagatcaacggtctaaaattc
acgtaccccggaatcgacggtcatcctccgccgggttccactcctttaatcgaagatttc
tctctctctcttcactctggagatcgctgcctccttgttggatccaatggcgctgggaaa
acgacaattctgaagatattgggagggaagcacatggttgaaccccatatggtccgcata
cttggaagatcagcatttcatgacactgcattgacttcttctggtgatctcagctatctt
ggtggcgagtggaagcgagaagttgcttttgccgggtttgaggttgcaatacaaatggat
gtttctgcagaaaaaatgatatatggagttgctggtattgatcctcaaagaagagatgag
ttaattaaggtactggatatcaatctatcatggaggatgcacaaggtatctgatggtcag
agaagacgagtgcaaatctgtatgggtcttctcaagccattcaaggtccttcttcttgat
gagataacagttgaccttgatgttctagcaagggctgaccttctgaagtttctaagaaag
gagtgtgaagagcgaggtgccacaatcatctatgcaacacatatattcgatggcctagag
aactggccatctcatatagtttatgtggctcatgggaagttgcaattagcaatgcctatg
gataaagtcaaggaaatcagcaacctgtcactaatgagaacagttgaaagttggctgagg
aaagaacgagatgaggagaggaagagaaggaaagagagaaaagcatgtggacttccagaa
tttgagaaacaaattgaaggaagtcgtgtgactggtgatccagcccgtgctgccactcga
gcgcttaacaatggttgggcagcaggccggttgaattccaccattgctggagaagagaac
tttgttttaagctcaaatagagttctgagatag
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