| Entry |
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| Symbol |
SMCHD1
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| Name |
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
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| KO |
| K23113 | structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
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| Organism |
csab Chlorocebus sabaeus (green monkey)
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| Brite |
KEGG Orthology (KO) [BR:csab00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:csab03036]
103222694 (SMCHD1)
03400 DNA repair and recombination proteins [BR:csab03400]
103222694 (SMCHD1)
Chromosome and associated proteins [BR:csab03036]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103222694 (SMCHD1)
DNA repair and recombination proteins [BR:csab03400]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103222694 (SMCHD1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
18:61921477..62069187
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| AA seq |
2005 aa
MAAADGGGPGGASVGTKEDGGGVGHRTVYLFDRREKESELGDRSLQVGERSDYAGFRASV
CQTLGISPEENFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHNLIIEEKDKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYA
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAVEPQALYDE
VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
NFQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSCVLPDHLFRVGVP
FNIPLEFQDEFGHTTQLVTDIQPVLEASGLSLHYEEVTKGPNCVIRGVTAKGPVNSCQGK
NYNLKVTLPGLKEDSQILKMKLLPGQPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNV
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQMLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMRNLIFQMYDEGERE
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCEMKGGKTVQIGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG
LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWHEFSDFIRVQLISGPPAKLLLI
DWPELKECIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLTPSNQQHKTD
EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPVIKLMILPDPEKPVRLNVKYDKDAS
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP
AVSNVRSVASRTLVRDLHLSITDDYNNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT
LEFPFVNGSAEIVSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ
QQMAALTKEKDQLSQSIIMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP
TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLY
FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKVD
SVNKDLNSQLEYLRTPDMKKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVEMT
DCPIPPKRMRREAARQNRIITKTDV |
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| NT seq |
6018 nt +upstreamnt +downstreamnt
atggcagcggcggacggcggcgggcccggcggggcctctgtggggactaaggaggatggc
ggaggcgtcggccacaggacggtgtacttgtttgaccggcgcgaaaaggagtccgagctc
ggggaccggtctctgcaggtcggggagcgctcggactacgcgggatttcgcgcctctgtg
tgtcagacacttggcatttcacctgaagaaaactttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttgtacctgcta
cagtcagtgaatcagttactactgacagctacgaaagaacgaattgacttcttacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgccagtgaaggacaaaatcct
ttgccatttgctcttgcggaattaattgacaattcattgtctgctacttctcgtaacatt
ggggttagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttgtcaaaattcacaagacaaggtgactttgaaagtgatcattcaggatatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gacgttcatgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaat
gatgatgaaagatttctacataatcttatcatagaggagaaggataaagatagctttact
gctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttccac
ctttggacacgacagttagcgcatatttatcattactatattcatggcccaaaaggaaac
gaaatacgaacatcaaaagaagttgaacctttcaacaatattgatattgaaatttctatg
tttgaaaaagggaaggtacctaagattgtcaacctaagggaaatacaagatgacatgcag
acgttgtatgtaaacacagcagctgacagttttgaattcaaagctcatgttgaaggagat
ggtgtagtggaagggattatccgttatcatccattcttatatgatagagaaacctaccct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcata
cttgagaaagcagctagagggaaaaggcctatttttgaatgtttttggaatggacgatta
ataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacgtttatggatcttgagctaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggaacagcgaatgaaaattgacagagaatttgct
ttgtggctgaaggattgtcatgaaaagtatgataaacaaataaaatttacgctttttaag
ggaataattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatatgca
gcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagaca
cttcctctcttttatggaagcatagtaagattttttctttatggcgatcatgatggagaa
gtatatgctactggaggagaggttcaaattgcagtggaacctcaggcactgtatgatgaa
gtaagaactgtgccaattgcaaagctggataggacagttgctgagaaagctgtaaaaaaa
tatgtagaagatgaaatggcaaggctgcctgatagattgtcagtaacttggcctgaagga
gatgaattattgcctaatgagattaggcctgctggaacccctattggtgcactaagaatt
gaaatattgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagccacggaggg
tcaaaaaaactcctggttgagctcaaagttattttacattcttcaagtggaaataaagag
attatttcgcatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aactttcagaagttggggaattataccttgaaattacaagttgtgttgaatgaaagtaat
gcagacacttatgcagggagaccgctaccatctaaagcaattaagttttctgttaaagag
ggtaagccagagaaattttcatgtgttcttccggatcatctttttcgtgttggagttcca
tttaatatccctctggagtttcaggatgaatttggtcataccactcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaagtaaccaaagga
ccaaattgtgtaattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaag
aattataatctgaaggttactctgccgggcttaaaagaagactcacagattttgaaaatg
aaattactacctggtcagcctcgtcgattgaaagtaaaacctgattccgaaattttagtt
atagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcagacaacgta
acagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccagtc
tatgttgtagattgcagtagttccggaaccagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagatgcttaaagcaagaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttacttcccagtagccatgttgcaagactacaa
atattcagtgtggaaggacaaaaggcaattcagatcaaacatcaggatgaggttaattgg
atagcaggtgatattatgcgtaatcttatttttcaaatgtatgatgaaggagaaagagaa
atcaatataacatccgctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagagcacttgctacagggtcttcttcctgatgtgcaagtaccaacatctgtaaaagat
atgcgctattgccaggtttctttccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacatttaaaatgtgagatgaaaggaggaaaaacc
gtacagattggccaagagcttcaaggagaagtagttataataattacggatcagtacgga
aatcagattcaagcattttcaccaagttctttatcttctttgtcaattgctggggttgga
cttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataagtgtaaga
ggcatcaaatttattccaggtcctcctggaaataaggatctttgttttacttggcatgag
ttttctgactttattcgagtgcaactaatttctggacctcctgctaaactacttcttata
gactggccagaactgaaggagtgcattccagtgattaatggaagagatttacagaaccct
attattgttcaactttgtgatcagtgggataatccagcaccggtacaacatgttaaaata
agtcttacaaaagctagcaatttaaagctcacgccttcaaaccaacagcataaaacagat
gagaaaggcagggctaatttgggagtattcagtgtttttgcccctagaggagagcatact
ctgcaggttaaagccatctataacaaaagtatcatagaaggacctgtaattaagttaatg
attcttccagatccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcttcc
ttcttagcagggggtcttttcactgattttatgattagtgttatttctgaagatgacagt
atcattaaaaatattaatccagcacgtatttccatgaaaatgtggaagctgtctaccagt
gggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaggaagatggctgcttctatttcagggataaagtaattcctaataaagtggggacatat
tgtatccagtttggttttatgatggataaaacaaatattctcaacagtgaacaggttata
gttgaagtcctgcctaatcaacctgtgaagttagtacctaaaattaaaccacctacacca
gctgtttctaatgttcgctcagttgccagtaggaccttggtcagagatctacatcttagt
atcacggatgactacaacaaccatactggaattgatttggttggcactataatagccacc
attaaaggctctaatgaggaagatactgataccccactgtttatcgggaaagttagaaca
cttgaattcccctttgtgaatggttcagctgaaatcgtgagtctggtgctggcagaaagt
agtcctggaagggatagtactgaatattttattgtatttgagccccggctaccactttta
tcaagaaccttagaaccatatatcctaccattcatgttttacaatgatgttaagaagcag
caacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattattatgtat
aaaagtttatttgaagccagccaacagcttcttaatgaaatgaaatgtcaagttgaagaa
gcaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacattcct
acaacacaacaggtgccacacattgaagcgcttctgaaaagaaagctatcagaacaggaa
gaactgaagaaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggg
gatgttttgggaaagattgcacatctagcacaaattgaagatgatagagctgcgatggtt
atttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgatgctgca
cgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttat
aagaagactcttccagattggaaaagacctctacctcatttccgaaatggaaaattgtat
tttaaacccattggagatccagtctttgctcgagacttgttaacatttccagataatgta
gaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctg
gatgcagccaatcattatagaaaagaggttgttaaaattacacactgtcctacactgctg
accagagatggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagtaccaaaacagtgtctg
atcttaggggaacaaatagatcttcttcagcagtatcgttctgctgtgtgcaaagtagac
agtgtgaataaggatcttaacagtcagttagagtaccttcgcactccggatatgaagaag
aaaaagcaagaacttgatgaacatgagaaaaatctcaaactaatagaggaaaaactaggt
atgactcccatacgtaagtgtaatgactcattgcgtcattcaccaaaggttgagatgaca
gattgtccaattcctcctaaaagaatgagacgagaagctgcaagacaaaataggattata
accaaaacagatgtgtga |
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