Chitinophaga sancti: SIO70_06460
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Entry
SIO70_06460 CDS
T09582
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csac
Chitinophaga sancti
Pathway
csac03030
DNA replication
csac03410
Base excision repair
csac03420
Nucleotide excision repair
csac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SIO70_06460 (ligA)
03410 Base excision repair
SIO70_06460 (ligA)
03420 Nucleotide excision repair
SIO70_06460 (ligA)
03430 Mismatch repair
SIO70_06460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csac03032
]
SIO70_06460 (ligA)
03400 DNA repair and recombination proteins [BR:
csac03400
]
SIO70_06460 (ligA)
Enzymes [BR:
csac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SIO70_06460 (ligA)
DNA replication proteins [BR:
csac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SIO70_06460 (ligA)
DNA repair and recombination proteins [BR:
csac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SIO70_06460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SIO70_06460 (ligA)
MMR (mismatch excision repair)
DNA ligase
SIO70_06460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SIO70_06460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WPQ64508
LinkDB
All DBs
Position
complement(1529409..1531526)
Genome browser
AA seq
705 aa
AA seq
DB search
MYTKEIEITLAQLAKQLLAQLQKKESPSAIDETLENLRRVILYNDWRYYVQSEPVLSDYE
YDQLFAWLKQLETVHPDRISPDSPTQRVALGLNKAFPTVQHLVPMLSLENSYNADDLLDW
DRKAREISGLADIEYCIEPKFDGASISLIYENDRLTRGATRGDGVAGDDITTNIRQIRSI
PLTANFSKFGIHTIEIRGEVLINKSTFKAFNDQRAAENLPPLANPRNAASGSLRMVDPKE
VAKRGLEAFLYHMSYHTMEDGQTEPKEIQTHSNTLDMLTQLGFRSPAKEKKVVKGIQAVI
DYVLTFENERDNLPYEIDGMVIKVNDYELQDKLGMTTHHPRWAMAYKFKARQATSKLRDV
EFQVGRTGSITPVAKIDPVPIGGVTVGSISLFNEDVIREKDLKLGDTVLVERAGDVIPYI
VKSVADLRDGSEREIVFPKECPVCKEPLFKPEGESVWRCININCEAQVVERMIHFVSKDA
MDIKSFGESNVRKFYGLELMRDIPGIYTIDFSKLEQLEGFGKKSLTNLQTAIEASKTQPL
HRLIFGLGIRYVGETTAKTLANAISYLPDFKDWTEEQLLALEDIGPKVAGSIKQFFATPE
NLDMLKHLEELGLNLKSTRSDHPVGGTFGGQTFLFTGTLNKLKRSDAEAMVEQQGGKILS
GVSSKLNYLVVGDDAGSKLEKAKKINTIHILSEDEFLNLINQHQG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgaaagaaatagaaatcactttagcgcaattagcgaagcaactgttagctcaa
ttgcaaaaaaaagaaagcccctccgccattgatgaaactctggaaaacctccgtcgtgtc
atactctacaatgactggcgctattatgtacagagcgagccggtgctgagcgattatgaa
tatgatcaactctttgcctggttaaaacagctggaaacggttcatccggaccgtataagc
ccggactcccccacacagcgcgttgccctgggccttaacaaagccttcccaactgtacag
cacctggtacccatgctgagcctggaaaactcttacaatgccgatgacctgctggactgg
gaccgcaaagcccgggaaatcagcggcctcgccgatatagaatattgtatagagcccaaa
ttcgatggcgccagtatatcattaatatacgaaaacgaccgcctgacccggggcgctacc
cggggcgacggtgtggcaggcgatgatattaccaccaatatccgtcagatccgctctatc
cccctcactgccaacttttcgaaatttggtatccatactatcgaaatccgtggcgaggta
ttaattaataagagcactttcaaagcctttaatgaccagcgtgctgccgaaaacctgccg
ccactggccaatccccgtaatgcagcctctggttcccttcgcatggtagacccgaaagaa
gtggcgaaacggggcctggaagccttcctttaccacatgagttatcataccatggaagac
gggcagactgaaccaaaggaaatccaaacccatagcaataccctggatatgctgacccaa
ctgggtttccgctctcccgctaaggagaaaaaggttgtaaaaggcattcaggcagtgatc
gattatgtgctgactttcgaaaatgaaagggataatcttccatatgaaatagatggaatg
gtaataaaagtaaatgattacgaactgcaggataaactgggtatgaccacccaccacccc
cgctgggccatggcgtacaagttcaaagcccgccaggccaccagcaaactgagggatgtg
gaattccaggtaggtcgtaccggttctattacccctgtggccaagatcgatcctgtacct
attggtggtgttacagttggttccatttcattatttaatgaagatgtaatccgtgaaaag
gatttgaaacttggtgatactgtcctggtagaaagagccggcgatgtgatcccttatatc
gtaaagtcagtggctgacctgcgggatggttctgaaagggaaattgtattccctaaggaa
tgcccggtatgtaaagagccacttttcaaaccggaaggtgaaagtgtatggcgctgtatc
aatattaactgcgaagcgcaggtggtagaaagaatgatccacttcgtaagcaaagatgca
atggacatcaagagttttggcgaaagcaacgtccgtaaattctacggcctggaattgatg
cgcgatattccgggtatctataccatcgactttagcaaactggaacaactggaaggattt
ggaaagaaatcgctcactaacctgcaaacagcgatcgaagcctccaaaacccagcctttg
catcgcctgatctttggtttgggcatccgctatgtgggtgaaaccaccgccaaaacactg
gcaaatgccatcagttacctgccggacttcaaagactggacagaagaacaattgcttgcg
ctggaagatataggcccaaaagtagctggcagtatcaaacagttcttcgctacgccggaa
aacctggatatgctgaaacacctggaagaattagggctgaacctgaaaagcacccgttct
gatcatccggtgggtggtactttcggcggacaaacattcctctttaccggtacgctcaat
aagctgaaacgtagtgatgcagaagccatggtagagcagcagggtggtaaaatcctgagt
ggcgtatccagcaagctgaattacctcgtggtaggtgacgatgcgggtagtaaactggaa
aaagcgaaaaagatcaatacaatacacatcctgagtgaggatgaatttttaaacctgatt
aatcagcaccagggatga
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