Cololabis saira (Pacific saury): 133421374
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Entry
133421374 CDS
T09849
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133421374
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133421374
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
133421374
NCBI-ProteinID:
XP_061566903
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All DBs
Position
21:333138..415159
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AA seq
1761 aa
AA seq
DB search
MASLLPPVGVELFRRFTPASLEEIQRRHDAEEAELQRRTEKNIQIAEEDLPKPASDLEAG
KSLPFIFGDPPPELLNTPLEELDPFYQSQKTFIVLSKGNVLYRFNADPAVYLLDPFSRLR
QAAIRILIHSLFSLFIMVTILTNCVFMTMSDPPPWSKTVEYVFTGIYTFEASVKVLSRGF
CLGKFTFLKDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLKQKCVRSMFNSTGWHDNSTGWHGND
TDVHFDFHQHINNPENYYYLPGTIDPLLCGNSSDAGVCPYGYVCMKAGRNPNYGYTNYDT
FGWAFLALFRLMTQDFWENLFQMTLRAAGKTYMIFFVFIIFLGSFYLINLILAVVAMAYA
EQNEASIAEAKQKEEEYAEIMELLKKRREEQEISKMALIEKGNEEIHDPTAMEDLEEDRR
PCCPCWYSFANVFLKWDCCGCWIRLKKVLFIVVMDPFVDLAITICIVLNTVFMAMEHYPM
TEEFEEVLTVGNLVFTGIFTAEMVLKLLAMDPYNYFQVGWNIFDSIIVTMSLVELGLADV
QGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKNYKDCVCRISSDCELPRWHMNDFFHAFLIIFRVLCGEWIENMWDCMEVSGPAMCLIVF
MMVMVIGNLVVLNLFLALLLSSFSGDNLAAPEEDGENNLQIAINRINRGLAWTRSWILQQ
IWTLLGKKTSLDLENKEVKSDEDTKCQEVLVLSVVASDQPTPTGYYGNNGQNIPSLKVPI
AEAESDCETEENEDEEVEDDEEEQLSQGDESSVCSTIQKLPSVHEEEDEDENDPNTPENC
FSDKCYRRCPRLDVDTSEGRGKIWFNVRKTCFTIVEHNYFETFIIFMILLSSGALAFEDI
YMEQRPVIKIILEYADQVFTYVFVVEMLLKWTAYGFQTYFTNAWCWLDFLIVDVSLVSLT
ANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLI
FSIMGVNLFAGKFYYCFNETSEEYFSPEDVNNKTQCLELMEYNFTEVRWKNVKVNFDNVG
MGYLSLLQVATFKGWMEIMYAAVDSREVESQPEYEANLYMYLYFVCFIIFGSFFTLNLFI
GVIIDNFNQQKAKQGGTDLFMTEEQKKYYNAMKKLGSKKPQKPVPRPKNKFQGLVFDLVG
KQFFDIFIMVLICLNMVTMMVETDDQSPEKEYILYWINLVFIVIFTCECSLKLLALRHHY
FSVGWNIFDFVVVILSIVGLLLADIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTL
LFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKESIIDDIFNFQSFGNSMICLFM
ITTSAGWDGLLSPIMNTPPDCDPDIENPGSQVRGNCGSPGVGIVFFSSYIIMSFLVVVNM
YIAIILENFNVATEESGDPLCEDDFEMFYETWEKFDPDASQFIKYSELSDFCDTLQDPLK
IPKPNTFKLIHMDLPLVPGDKIHCLDILLALTAEVLGDSGAMDTLKASMEEKFMANNPSK
VSYEPISSTLRRKQEELAASVIQRSYRKHLLQRTIRLASYTFREKKNRDLGKNNAPQNQL
TPPETEGLLCERMNQLYGGPGGSQEPPRGPEGPQEPPRGPEGPQEPPRFKVQLESDFLLH
AAPPHHQPNLQQDENLRESTV
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgctgctgccccctgttggagtggaactgttccgacgcttcacgccggcgtct
ctggaggaaatccagcgccgacacgacgccgaggaggcggagcttcagaggaggacggag
aagaacatccagatcgcagaggaagaccttcctaaacccgccagtgacctggaggccggg
aagtcccttcccttcatcttcggagacccgccccccgaactcctcaacaccccgttggag
gagctggatccattctaccaatcacagaagacgttcatcgtgctcagtaaggggaacgtc
ctctacaggtttaacgctgatccggccgtttacctgctggatccattcagccgtctgaga
caggccgccatccggatcctcatccattcgttgttcagtttgttcatcatggtgacgatt
ctgaccaactgtgttttcatgacgatgagtgacccgcccccctggagcaagactgtggaa
tacgtgttcaccggcatctacacgtttgaagcgtccgtcaaagttctgtcccgaggattc
tgtctaggaaagttcacgttcctgaaggatccgtggaactggctggacttcatggtgatc
agcatggcatatctgacagagttcgtagatttgggaaacgtttctgcgctgaggacgttc
agagttctacgagccttgaagacgatcacggtcatcccgggtctgaagacgatcgtcggc
gctctcatccagtccgtgaagaagctagccgacgtcatgatcctgaccgtgttctgcctc
agcgtcttcgctctgattggtctgcagcttttcatggggaacctcaaacagaaatgtgtc
cggtccatgttcaactccaccggttggcatgacaactccaccggttggcatggcaacgac
accgacgtccactttgacttccatcagcacatcaacaacccggaaaactattactacctt
cctggaacgatcgatccgctgctgtgtgggaacagctctgacgccggggtctgtccgtac
ggctacgtctgcatgaaggcggggagaaaccccaactacggctacaccaactacgacacg
tttggctgggcgttcctggctctgttccgactcatgactcaggacttctgggaaaacctc
ttccaaatgacgttaagagcggccggtaaaacctacatgatcttcttcgtcttcatcatc
ttcctgggctccttctacctgatcaacctgatcctggccgtggtggccatggcctacgcc
gagcagaacgaggcgtccatcgccgaggccaagcagaaggaggaggagtacgccgagatc
atggagctgctgaagaaacgacgagaggagcaggagatcagcaagatggctctgattgag
aaaggaaacgaggagatccacgaccccacagctatggaagacctggaggaggaccggcgg
ccatgttgtccctgctggtattccttcgctaacgtcttcctgaagtgggactgttgcggc
tgctggattcggctgaagaaagtgctcttcatcgtcgtcatggacccgttcgtcgacctg
gccatcaccatctgtatcgtcctcaacaccgtgttcatggccatggaacattacccgatg
accgaggagttcgaggaggttctgactgtcgggaatctggttttcacagggatcttcacg
gctgaaatggtcctgaagcttctggccatggacccgtataactacttccaggtgggctgg
aacatcttcgacagcatcatcgtcaccatgagtctggtggagctgggattggccgacgtc
cagggtctgtctgtgctgcgctccttccgattgatgcgagtgtttaagctggccaagtcg
tggccgaccctcaacatgctgataaagatcatcgggaactcggtgggagctctggggaac
ctgactctggtcctcgccatcatcgtcttcatcttcgccgtggtgggcatgcagctgttc
gggaagaactacaaagactgcgtgtgtcgcatctcgtcggactgcgagcttcctcgctgg
cacatgaacgacttcttccacgccttcctcatcatcttcagggtcctgtgcggcgagtgg
atcgagaacatgtgggactgcatggaggtttctggaccggccatgtgtctgatcgtcttc
atgatggtgatggtgatcgggaacctggtggtcctgaacctgttcctggcgctgctcctc
agctccttcagcggtgataacttggcggctccagaggaagatggagaaaacaacctccag
atcgccataaaccggatcaaccggggcttggcctggaccagatcctggatcctgcagcag
atctggaccctgctggggaagaagaccagcctggacctggagaacaaggaggtcaaatct
gacgaagacaccaagtgtcaggaggttttggttctgagtgtcgttgcctcggaccagccg
acacccaccggttactacggcaacaacggccagaacatcccgtccctgaaggttcccatc
gccgaggccgagtccgactgtgagacggaggagaacgaagacgaggaagtggaggacgat
gaagaagagcagctctctcagggtgacgagtcgtcggtttgcagcaccattcagaagctt
ccttcggtccacgaggaggaagacgaggatgaaaacgaccccaacacgcctgagaactgc
ttcagtgacaagtgctaccgtcgttgtcctcggctggacgtggacacatctgagggacga
gggaagatctggttcaacgtgaggaaaacctgcttcaccatcgtagaacacaattacttt
gagacgttcatcatcttcatgatcctgctgagcagcggagcgctggccttcgaggacatc
tacatggagcagcggccggtcataaagatcatcctggaatacgcggaccaggttttcacc
tacgtgttcgtggtggagatgcttctgaaatggacggcctacgggttccagacgtacttc
accaacgcctggtgctggctggacttcctcatcgttgacgtgtctctggtctccttgact
gccaacatcctgggatactcagaactgggagccatcaagtctctgaggacgctgagggcc
ctgaggcccctgagggccctgtcccggttcgagggcatgagggtcgtagtcaacgccctg
gtcggcgctatcccctccatcttcaacgtgctgctggtgtgtctgatcttctggctgatc
ttcagcatcatgggggtgaacctgttcgccgggaagttttactactgtttcaacgagacg
tcggaggagtatttctcccccgaggacgtcaacaacaagacgcagtgcctggaactgatg
gagtataacttcaccgaggttcgctggaagaacgtgaaggtgaacttcgacaacgtgggg
atgggatatctgtcgctgctgcaagtggccacatttaaagggtggatggagatcatgtat
gcagcggtggactccagagaggtggagtcccagcccgagtacgaggctaacctctacatg
tacctgtacttcgtctgcttcatcatcttcggctcgttcttcaccctcaacctcttcatc
ggagtcatcatcgacaacttcaaccagcagaaagccaagcagggaggaactgacttgttt
atgacggaagagcagaagaaatattacaacgccatgaaaaaactgggatccaagaaacct
cagaaacctgttccccgacccaagaacaagttccagggtctggtgttcgacctggtgggt
aaacagttcttcgacatcttcatcatggtgctgatctgcctgaacatggtgacgatgatg
gtggagacggacgaccagagcccggagaaggagtacatcctgtactggatcaacctggtc
ttcatcgtcatcttcacgtgcgagtgttcgctgaagctgctggcgctgcgacaccactac
ttctccgtgggctggaacatcttcgacttcgtggtggtgatcctgtccatcgtagggctt
ctcctggccgacatcatagagaaatactttgtttctccgactctgttccgcgtgatccga
ctggctcgtatcggccgggtcctgcgtctgattcgcggagctaaagggatccggacgctg
ctgttcgccctgatgatgtcacttcctgccctgttcaacatcggcctgctgcttttcctc
atcatgttcatcttctccatcttcggcatgtccaacttcgcctacgtgaagaaagagtcg
attatcgacgacattttcaacttccagagcttcggaaacagcatgatctgcctgttcatg
atcaccacgtcggccggctgggacggcctgctgagccccatcatgaacacgccccccgac
tgtgaccccgacatcgagaaccctggatcacaggtgcgagggaactgcggcagccccggc
gtcggcatcgtcttcttctcgtcctacatcatcatgtcgttcctggtcgtggtcaacatg
tacatcgccatcatcctggagaacttcaacgtggccacggaggagagcggcgacccgctg
tgtgaggacgactttgagatgttctacgagacgtgggagaagttcgaccccgacgcctcg
cagttcatcaagtacagcgagctctccgacttctgcgacaccctccaggacccgttgaag
attcccaaacccaacaccttcaagctgatccacatggaccttcctctggttccaggagac
aagatccactgcctggacatcctgctggccctcaccgcagaagtcttgggtgattccgga
gcaatggacacactaaaggctagcatggaggagaaattcatggccaacaacccctcaaag
gtgtcgtacgagccgatcagcagcaccttgaggaggaagcaggaggagttagccgcttcg
gtgatccagagatcctacaggaaacatctcctgcagagaaccatccgcctggcctcctac
accttcagggagaagaagaaccgggatctggggaagaataacgctcctcaaaaccagcta
actcctccggagaccgagggactgctctgtgagaggatgaatcagctgtacggaggtcca
ggtggttcacaggaacctcctcgtggtccagaaggtccacaggaacctcctcgtggtcca
gaaggtccacaggaacctcctcgcttcaaggtgcagctggagagcgacttcctcctccac
gctgctcctcctcatcaccaaccaaaccttcaacaggacgagaacctcagggagtcgacc
gtctga
DBGET
integrated database retrieval system
