Cololabis saira (Pacific saury): 133422120
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Entry
133422120 CDS
T09849
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133422120 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133422120 (smcr8a)
Membrane trafficking [BR:
csai04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
133422120 (smcr8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
133422120
NCBI-ProteinID:
XP_061568004
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All DBs
Position
21:complement(27680946..27690337)
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AA seq
942 aa
AA seq
DB search
MTVTAAAAAHALLSNTTMIGSPDVVAFTKEDEYGESNPDPCGLPEEFSVPLYPLADSNPW
AKTSYAKFTKDFILISEFSEQVGPQPLLTIPDDPKVCGTFDLNYFSLRIMSVDYQASFVG
HTPGSGYPRLSFVEDSRVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYIAADERKI
MLQFQELSLRFSQASECMKAGNRRAFAKELQRKLQDLEYTHSVLQREEGLQREAGPQCMY
SAYAVEKANELANVEKSIFEHRDLLKQISSYHRRQRRDPHAVSCQKCMTECLSECEELLD
KYANFAHPCSYSDKVRSENDKGGEEGDEEEDEGVKRRPSYTPQLIKAKSAKCFDKRLKTM
TELCERTFYEATVGILRETERSFRGDLCYLHTRRLDKALRRKQSVVNFLFEEELENNDSE
GEAGTLRPFCAVNHTVDNHVKLNPPHIVLGPEPCELSAPQPPRTLDKGEFGDHHLVSSAS
DQTPETQESSEATKGSFSSDKSGMDQADKQDSLASMKSEGPDPDFDLTPDPDHNTDMEKE
TSSDENETTAGEDEADNGGDQTPLSLLEVASELEACKEDECEAVNPSEMLVPIDTTCCIA
QEGFLYDTSAPHIVPCLQQNSNPQLCRIPVVNQEPQALLPLQDDYTVGSPSSKSPPVGLE
LPVGLAGDTVSRISVEDGSDCTMSASTGSDRAASPLGYGGVLTLRQRKKAGQGALRFVRQ
YPFALQALWCLLSGRTLVVLGAEESRVRRLVSALALFVPAPGKCGERVQAWLSCPFTLSD
LHRWKLIGLQRVASPVGSSMLNSLSRYSRYISILDADQKTLRCPPYRGQLLANVADHRTY
IRRGSTYFLHVQSTLCHLAARAFLFTFTHHLHVPVSSTEGPGVVEGRRQCFLQEQLGLDE
EDSQILLYLSQLVTQHYLQPTSSSTAAPSFSFNYTTSVLYKI
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgactgctgctgctgctgctcatgccttgctcagcaacaccactatgatcggc
tccccggatgtggtagctttcactaaagaggatgagtatggggaatcaaatccagacccg
tgtgggctcccagaggagttctcggtccccctctatccgctggcagactctaatccttgg
gcaaaaacctcttacgccaaattcaccaaagacttcatcctcatatctgagttctctgag
caggtcggccctcagcctcttctcaccatccccgatgatcctaaagtctgtgggaccttt
gaccttaactacttctccctgcggatcatgtcggtggactaccaggcctccttcgtgggc
cacacgcccggcagcggctatccaaggcttagttttgtggaggactcgagggttgtcctg
ggagactcaaaggagggggccttcgcctatgttcatcacctcaccctgtacgacctggag
gccaggggcttcgtgcggccgttctgcatggcgtacattgcagcagatgagaggaagatc
atgctacagtttcaagagctctccctccgcttctcgcaggcctctgagtgcatgaaggct
ggaaacaggagagcgttcgccaaggaactccagaggaagctgcaggacctcgagtacacc
cactccgtcctgcagagggaggagggcctgcagagggaggcggggccacagtgcatgtac
tctgcgtatgccgtggagaaggccaacgagctggctaacgtagaaaagagcatttttgaa
catagagacctgctgaaacagatcagctcgtaccaccgccgccagcgccgggaccctcac
gccgtctcctgccagaagtgcatgactgagtgtttgagcgagtgcgaggagcttttagac
aagtacgccaattttgcccacccttgtagttatagtgacaaggttcggtcagaaaacgac
aaaggtggagaagagggagatgaggaggaagacgagggtgtgaaacgcaggccgtcctac
acgccgcagctgatcaaggccaagtctgccaagtgtttcgacaagcgtctgaagaccatg
acggagctgtgcgaaaggactttctacgaggccacggtgggaatactgagagaaacggag
aggagtttccggggcgacctgtgttacttgcacacacgccgcctggacaaagctctgcgc
cggaaacagagcgttgtcaacttcttgtttgaggaggagctggagaacaatgacagcgag
ggcgaagcgggaacactaagaccgttctgtgctgtgaaccacaccgtagacaaccacgta
aaactgaacccacctcatatcgtgctcggaccagaaccgtgtgagctgagtgctccccaa
cccccacgtacgctggacaagggggagtttggggaccaccatctggtgtcttctgcctca
gaccagaccccggagacgcaggagagctccgaggcgaccaaaggcagcttcagcagcgac
aagagcggcatggatcaagcagataagcaagacagtctggccagcatgaagtcagaaggt
ccggatcctgattttgacctgacccccgaccccgaccacaacactgacatggagaaagag
accagcagcgatgaaaatgagaccacggcaggggaggacgaggccgacaacggaggggac
cagacccctctgtcactactggaagtggcgtctgagctggaggcttgtaaggaggatgag
tgtgaggcagtaaacccgtcagagatgctggttcccatcgacaccacatgctgcattgcc
caggagggtttcctttacgacacatctgctcctcatatcgtgccttgcctgcaacagaac
tccaacccgcaactttgcagaatcccggtggtcaatcaggagccacaagccctccttccc
ctgcaggacgactacactgtgggttctccaagctcaaagagtcctccggtcgggctggag
cttcccgtggggctcgccggagacacggtctcccgtatttccgtggaggacgggtccgac
tgcaccatgagcgcttccaccgggtctgatcgggccgcctcacccctcggctacggcggg
gtgctgaccctccgccagaggaagaaggcgggtcagggcgccctgaggttcgtgcgccag
tatcccttcgccctgcaggcgctgtggtgcctgctgagcggcagaactctggtggtgctc
ggggctgaagagtcccgggtccgccgcctggtgtcggctctggctctgtttgtcccggct
cctgggaagtgtggggagcgggttcaagcctggctgtcgtgtcctttcaccctctctgac
ctgcataggtggaaactcatcggattgcaaagagttgcatctcccgtgggctccagcatg
ctcaactcgctgtcccgctacagtcgctacatctccattctggatgctgaccagaagacc
ctgcgctgcccgccgtatcgcggccaactcctcgccaacgtagccgaccaccgcacctac
atccgccgcggctccacctacttcctccacgtccagagcacgctctgtcacctggcggcc
agggccttcctgttcaccttcactcaccacctccatgtgccggtgagctccacggagggg
ccgggcgtcgtcgagggcagacgccagtgcttcctgcaggagcagctggggctggacgag
gaggacagccagatacttctttacctcagccagctcgtcacacagcactacctgcagccc
accagcagcagcactgcagccccttcgtttagtttcaactacacaaccagcgttttatac
aaaatctaa
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