Cololabis saira (Pacific saury): 133422521
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Entry
133422521 CDS
T09849
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133422521 (scn4ab)
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133422521 (scn4ab)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
133422521
NCBI-ProteinID:
XP_061568531
LinkDB
All DBs
Position
21:complement(6306..67327)
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AA seq
1761 aa
AA seq
DB search
MASLLPPVGVELFRRFTPASLEEIQRRHDAEEAELQRRTEKNIQITEEDLPKPASDLEAG
KSLPFIFGDPPPELLNTPLEELDPFYQSQKTFIVLSKGNVLYRFNADPAVYLLDPFSRLR
QAAIRILIHSLFSLFIMVTILTNCVFMTMSDPPPWSKTVEYVFTGIYTFEASVKVLSRGF
CLGKFTFLKDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLKQKCVRSMFNSTGWHDNSTGWHDND
TDVHFDFHQHINNPENYYYLPGTIDPLLCGNSSDAGVCPYGYVCMKAGRNPNYGYTNYDT
FGWAFLALFRLMTQDFWENLFQMTLRAAGKTYMIFFVFIIFLGSFYLINLILAVVAMAYA
EQNEASIAEAKQKEEEYAEIMELLKKRREEQEISKMALIEKGNEEIHDPTAMEDLEEDRR
PCCPCWYSFANVFLKWDCCGCWIRLKKVLFIVVMDPFVDLAITICIVLNTVFMAMEHYPM
TEEFEEVLTVGNLVFTGIFTAEMVLKLLAMDPYNYFQVGWNIFDSIIVTMSLVELGLADV
QGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKNYKDCVCRISSDCELPRWHMNDFFHAFLIIFRVLCGEWIENMWDCMEVSGPAMCLIVF
MMVMVIGNLVVLNLFLALLLSSFSGDNLAAPEEDGENNLQIAINRINRGLAWTRSWILQQ
IWTLLGKKTSLDLENKEVKSDEDTKCQEVLVLSVVASDQPTPTGYYGNNGQNIPSLKVPI
AEAESDCETEENEDEEVEDDEEEQLSQGDESSVCSTIQKLPSVHEEEDEDENDPNTPENC
FSDKCYRRCPRLDVDTSEGRGKIWFNVRKTCFTIVEHNYFETFIIFMILLSSGALAFEDI
YMEQRPVIKIILEYADQVFTYVFVVEMLLKWTAYGFQTYFTNAWCWLDFLIVDVSLVSLT
ANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLI
FSIMGVNLFAGKFYYCFNETSEEYFSPEDVNNKTQCLELMEYNFTEVRWKNVKVNFDNVG
MGYLSLLQVATFKGWMEIMYAAVDSREVESQPEYEANLYMYLYFVCFIIFGSFFTLNLFI
GVIIDNFNQQKAKQGGTDLFMTEEQKKYYNAMKKLGSKKPQKPVPRPKNKFQGLVFDLVG
KQFFDIFIMVLICLNMVTMMVETDDQSPEKEYILYWINLVFIVIFTCECSLKLLALRHHY
FSVGWNIFDFVVVILSIVGLLLADIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTL
LFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKESIIDDIFNFQSFGNSMICLFM
ITTSAGWDGLLSPIMNTPPDCDPDIENPGSQVRGNCGSPGVGIVFFSSYIIMSFLVVVNM
YIAIILENFNVATEESGDPLCEDDFEMFYETWEKFDPDASQFIKYSELSDFCDTLQDPLK
IPKPNTFKLIHMDLPLVPGDKIHCLDILLALTAEVLGDSGAMDTLKASMEEKFMANNPSK
VSYEPISSTLRRKQEELAASVIQRSYRKHLLQRTIRLASYTFREKKNRDLGKNNAPQDQL
TPPETEGLLCERMNQLYGGPGGSQEPPRGTEGPQEPPRGPEGPEEPPRFKVQLESDFLLH
AAPPSHQPNLQQDENLRESTV
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgctgctgccccctgttggagtggaattgttccgacgcttcacgccggcgtct
ctggaggaaatccagcgccgacacgacgccgaggaggcggagcttcagaggaggacggag
aagaacatccagatcacagaggaagaccttcctaaacccgccagtgacctggaggccggg
aagtcccttcccttcatcttcggagacccgccccccgaactcctcaacaccccgttggag
gagctggatcccttctaccaatcacagaagacgttcatcgtgctcagtaaggggaacgtc
ctctacaggtttaacgctgatccggccgtttacctgctggatccattcagccgtctgaga
caggccgccatccggatcctcatccattcgttgttcagtttgttcatcatggtgacgatt
ctgaccaactgtgttttcatgacgatgagtgacccgcccccctggagcaagactgtggaa
tacgtgttcaccggcatctacacgtttgaagcgtccgtcaaagttctgtcccgaggattc
tgtctgggaaagttcacgttcctgaaggatccgtggaactggctggacttcatggtcatc
agcatggcatatctgacagagttcgtagatttgggaaacgtttctgcgctgaggacgttc
agagttctacgagccttgaagacgatcacggtcatcccgggtctgaagacgatcgtgggc
gctctgatccagtccgtgaagaagctagccgacgtcatgatcctgaccgtgttctgcctc
agcgtcttcgctctgattggtctgcagcttttcatggggaacctcaaacagaaatgtgtc
cggtccatgttcaactccaccggttggcatgacaactccaccggttggcatgacaacgac
accgacgtccactttgacttccatcagcacatcaacaacccggaaaactattactacctt
cctggaacgatcgatccgctgctgtgtgggaacagctctgacgccggggtctgtccgtac
ggctacgtctgcatgaaggcggggagaaaccccaactatggctacaccaactacgacacg
tttggttgggcgttcctggctctgttccgactcatgactcaggacttctgggaaaacctc
ttccaaatgacgttaagagcggccggtaaaacctacatgatcttcttcgtcttcatcatc
ttcctgggctccttctacctgatcaacctgatcctggccgtggtggccatggcctacgcc
gagcagaacgaggcgtccatcgccgaggccaagcagaaggaggaggagtacgccgagatc
atggagctgctgaagaaacgacgagaggagcaggagatcagcaagatggctctgattgag
aaaggaaacgaggagatccacgaccccacagctatggaagacctggaggaggaccggcgg
ccatgttgtccctgctggtattccttcgctaacgtcttcctgaagtgggactgttgcggc
tgctggattcggctgaagaaagtgctcttcatcgtcgtcatggacccgttcgtcgacctg
gccatcaccatctgtatcgtcctcaacaccgtcttcatggccatggaacattacccgatg
accgaggagttcgaggaggttctgactgtcgggaatctggttttcacagggatcttcacg
gctgaaatggtcctgaagcttctggccatggacccgtataactacttccaggtgggctgg
aacatcttcgacagcatcatcgtcaccatgagtctggtggagctgggattggccgacgtc
cagggtctgtctgtgctgcgctccttccgattgatgcgagtgtttaagctggccaagtcg
tggccgaccctcaacatgctgataaagatcatcgggaactcggtgggagctctggggaac
ctgactctggtcctcgccatcatcgtcttcatcttcgccgtggtgggcatgcagctgttc
gggaagaactacaaagactgcgtgtgtcgcatctcgtcggactgcgagcttcctcgctgg
cacatgaacgacttcttccacgccttcctcatcatcttcagggtcctgtgcggcgagtgg
atcgagaacatgtgggactgcatggaggtttctggaccggccatgtgtctgatcgtcttc
atgatggtgatggtgatcgggaacctggtggtcctgaacctgttcctggcgctgctcctc
agctccttcagcggtgataacttggcggctccagaggaagatggagaaaacaacctccag
atcgccataaaccggatcaaccggggcttggcctggaccagatcctggatcctgcagcag
atctggaccctgctggggaagaagaccagcctggacctggagaacaaggaggtcaaatct
gacgaagacaccaagtgtcaggaggttttggttctgagtgtcgttgcctcggaccagccg
acacccaccggttactacggcaacaacggccagaacatcccgtccctgaaggttcccatc
gccgaggccgagtccgactgtgagacggaggagaacgaagacgaggaagtggaggacgat
gaagaagagcagctctctcagggtgacgagtcgtcggtttgcagcaccattcagaagctt
ccttcggtccacgaggaggaagacgaggatgaaaacgaccccaacacgcctgagaactgc
ttcagtgacaagtgctaccgtcgttgtcctcggctggacgtggacacatctgagggacga
gggaagatctggttcaacgtgaggaaaacctgcttcaccatcgtagaacacaattacttt
gagacgttcatcatcttcatgatcctgctgagcagcggagcgctggccttcgaggacatc
tacatggagcagcggccggtcataaagatcatcctggaatacgcggaccaggttttcacc
tacgtgttcgtggtggagatgcttctgaaatggacggcctacgggttccagacgtacttc
accaacgcctggtgctggctggacttcctcatcgttgacgtgtctctggtctccttgact
gccaacatcctgggatactctgaactgggagccatcaagtctctgaggacgctgagggcc
ctgaggcccctgagggccctgtcccggttcgagggcatgagggtcgtagtcaacgccctg
gtcggcgctatcccctccatcttcaacgtgctgctggtgtgtctgatcttctggctgatc
ttcagcatcatgggggtgaacctgttcgccgggaagttttactactgtttcaacgagacg
tcggaggagtatttctcccccgaggacgtcaacaacaagacgcagtgcctggaactgatg
gagtataacttcaccgaggttcgctggaagaacgtgaaggtgaacttcgacaacgtgggg
atgggatatctgtcgctgctgcaagtggccacatttaaagggtggatggagatcatgtat
gcagcggtggactccagagaggtggagtcccagcccgagtacgaggctaacctctacatg
tacctgtacttcgtctgcttcatcatcttcggctcgttcttcaccctcaacctcttcatc
ggagtcatcatcgacaacttcaaccagcagaaagccaagcagggaggaactgacctgttt
atgacggaagagcagaagaaatattacaacgccatgaagaaactgggatccaagaaacct
cagaaacctgttccccgacccaagaacaagttccagggtctggtgttcgacctggtgggt
aaacagttcttcgacatcttcatcatggtgctgatctgcctgaacatggtgacgatgatg
gtggagacggacgaccagagcccggagaaggagtacatcctgtactggatcaacctggtc
ttcatcgtcatcttcacgtgcgagtgttcgctgaagctgctggcgctgcgacaccactac
ttctccgtgggctggaacatcttcgacttcgtggtggtgattctgtccatcgtaggtctt
ctcctggccgacatcatagagaaatactttgtttctccgactctgttccgcgtcatccga
ttggctcgtatcgggcgggtcctgcgtctgattcgcggagctaaagggatccggacgctg
ctgttcgccctgatgatgtcacttcctgccctgttcaacatcggcctgctgcttttcctc
atcatgttcatcttctccatcttcggcatgtccaacttcgcctacgtgaagaaagagtcg
attatcgacgacattttcaacttccagagcttcggaaacagcatgatctgcctgttcatg
atcaccacgtcggccggctgggacggcctgctgagccccatcatgaacacaccccccgac
tgtgacccggatatagagaaccccggatcacaggtgcgagggaactgcggcagccccggc
gtcggcatcgtcttcttctcgtcctacatcatcatgtcgttcctggtcgtggtcaacatg
tacatcgccatcatcctggagaacttcaacgtggccacggaggagagcggcgacccgctg
tgtgaggacgactttgagatgttctacgagacgtgggagaagttcgaccccgacgcctcg
cagttcatcaagtacagcgagctctccgacttctgcgacaccctccaggacccgttgaag
attcccaaacccaacaccttcaagctgatccacatggaccttcctctggttccaggagac
aagatccactgcctggacatcctgctggccctcaccgcagaagtcttgggcgattccgga
gcaatggacacactaaaggccagcatggaggagaaattcatggccaacaacccctcaaag
gtgtcgtacgagccgatcagcagcaccttgaggaggaagcaggaggagttagccgcttcg
gtgatccagagatcctacaggaaacatctcctgcagagaaccatccgcctggcctcctac
accttcagggagaagaagaaccgggatctggggaagaataacgctcctcaagaccagcta
actcctccggagaccgagggactgctctgtgagaggatgaatcagctgtacggaggtcca
ggtggttcacaggaacctcctcgtggtacagaaggtccacaggaacctcctcgtggtcca
gaaggtccagaggaacctcctcgcttcaaggtgcagctggagagcgacttcctcctccac
gctgctcctccttctcaccaaccaaaccttcaacaggacgagaacctcagggagtcgacc
gtctga
DBGET
integrated database retrieval system
