Cololabis saira (Pacific saury): 133443654
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Entry
133443654 CDS
T09849
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133443654 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csai03400
]
133443654 (tdg.1)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
133443654 (tdg.1)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
133443654 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
133443654
NCBI-ProteinID:
XP_061576743
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All DBs
Position
5:1496618..1533691
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AA seq
483 aa
AA seq
DB search
MEEKLNGSLPVVSPEYLHQWVRSAQQFQALQAQYSSFNPSQQFHYPDSHPGDAPLAQAGP
PLAQAGPPLAQAGPPEPPEPAMDQQEPADPAKPKKRGRAAQPKEPKPPKPPKVPKVPKAP
KPPKPPKEPKPPKPPKDPNAPKAKPGPKPKKAAESAANGKQEKIDESFKKVKRKVDRFKG
MSEEEVMKKTLPDLLDDNLDYVIIGINPGLMAAFIGRWFPGPGNHFWKCLFLSGFTEEQL
NHTHDTLLPVKYKMGFTNMVARATPGSKDLSSKELREGGKILVEKLIKYRPLIAVFNGKC
IYEMFCREMFGKKPKKLDFGLQPHKIPECDVALYLMPSSSARCAQFPRAQDKVHFYIKLR
ELRDQLRGVQKSTEVEEIQYSFDLGLAKEDAKRMAIKEETYDPGYEDAYGGAYAERTAEG
GPAGGGPAASHNGHCTFSSGPNTEGAQEAAAAASEAAAGSTELPDGQWMKQNFTDQIPDI
NGI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaagctgaacggatcgctgcccgtcgtctcgccggagtatcttcatcagtgg
gttcggtcggcccagcagttccaggctctccaggcccagtactccagcttcaaccccagc
cagcagttccattacccggacagccatcccggggacgcccccctggctcaggcgggcccc
cccctggctcaggcgggcccccccctggctcaggcgggccccccagaacccccagaacca
gccatggaccagcaggagccagcagacccggccaaacccaaaaagagaggcagagcagca
caacccaaggagccaaagccgcccaaaccccccaaggtccccaaggtccccaaggcgccg
aagccaccgaagccccccaaggaacccaagccaccaaaaccccccaaggacccaaacgca
cccaaagccaaacccggtccgaagcccaagaaggcggccgagtctgcggcgaacggcaag
caggagaagatcgacgagagcttcaagaaggtgaagaggaaagtggaccgcttcaaaggg
atgtctgaggaggaggtgatgaagaagacgctcccggacctgctggacgacaacctggac
tacgtcatcatcggcatcaatccaggactgatggcagcgttcatcggccgctggttcccc
ggcccgggaaaccacttctggaagtgcctgttcctgtcggggttcaccgaggagcagctc
aaccacacccacgacaccctgctgcccgtcaagtacaagatgggcttcaccaacatggtt
gccagggcgacgccgggcagcaaggacctgagcagcaaggagctccgcgagggaggaaag
atcctggtggagaagctgattaagtaccggccgctgatcgctgtgttcaacgggaaatgt
atctacgagatgttctgcagagagatgttcggtaaaaagcccaaaaagctggacttcggt
ctgcagccgcacaagatccccgagtgtgacgtggcgctgtacctgatgccgtcctccagc
gcccgctgcgcccagttcccccgggcccaggacaaggtccacttctacatcaagctgagg
gagctgcgggaccagctgaggggcgtccagaagagcacggaggtggaggagatccagtac
agcttcgacctgggcctggccaaggaggacgccaagcggatggcgatcaaggaggagacg
tacgaccccggctacgaggacgcctacggcggagcgtacgccgagaggacggctgaggga
ggcccggctggaggaggcccggctgcgagccacaacggccactgcaccttctcgtccggc
cccaacacagaaggcgctcaggaggcggcggcggcggcttcggaggcggcggcggggtcg
acggagctcccggacggacagtggatgaagcagaacttcacggatcagatcccagacatt
aacggcatctga
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