Cololabis saira (Pacific saury): 133446363
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Entry
133446363 CDS
T09849
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133446363 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133446363 (kdm2aa)
04121 Ubiquitin system [BR:
csai04121
]
133446363 (kdm2aa)
03036 Chromosome and associated proteins [BR:
csai03036
]
133446363 (kdm2aa)
Enzymes [BR:
csai01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
133446363 (kdm2aa)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
133446363 (kdm2aa)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133446363 (kdm2aa)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
133446363 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
133446363 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JmjC
JHD
F-box
Cupin_8
DUF7885
PHD
C1_1
Cupin_1
Motif
Other DBs
NCBI-GeneID:
133446363
NCBI-ProteinID:
XP_061580367
LinkDB
All DBs
Position
1:complement(43332262..43358823)
Genome browser
AA seq
1275 aa
AA seq
DB search
MEADPPTRGGEVYNRVSEVWTPGRRDGPQRAQHLSDRRRCAQAPLFSAVMGRAGTRRRYH
DDGISDEEIEGRRTFDLEEKVSGQRFGSDRVVRMAGKDFTYEYIQRGGLRDPIMFDKPEG
LGIMMPDPDFSVNDVKMFVGSRRMIDVMDVSTQKGTEMSMAQWTRYYETPVCQREKLYNV
ISLEFSHTKLENLVKRPTTLDLIDWVDNMWPRHLKERQRDSTNCINDMQYPKVQKYCLMS
VQGCYTDFHIDFGGTSVWYHILRGTKVFWLIPPTHQNLELYENWVLSGKQGDVFLGDRVS
DCQRIQLKQGSTFIIPSGWIHAVYTPVDSMVFGGNFLHSFNIPMQLNICNIEDRTRVPLK
FRYPFFYEMCWYVLERYIFSLTRTSYLTPEFQKHSLGIGLKRPPGADAMDLEDEQEDEQE
DLPLQPSETYLTPLELEGLWNLLGKLEAMPSNKKCVPAGILNASALVNHVKAHLREHASD
NPQQSYTGRPIITWPKRPSWYQPPPPPPPPPRPKLATTPIVPRPQKPPSSMSVLRRRRVR
CKRCEACVRPECGDCNFCRDMKKFGGPGKLKQTCVLRQCLSPGLPLSAVCEICKEPNQEE
TGDPSLTLMECSNCAQIVHPACLMVQGEGVISKDLPSCWECPKCVQGITERECKGDRGDG
LPAKRKSSSLLDARMTKIYRRHQHSRDGDDSDSDDDDEASHRRKMGLSARAGSSRRPLSA
QRRGLLRGGSAHRGGLMASGSAPVFKLKRGVGAKEVGRRGRGVRLRGGSRMQRRGDDSED
SDDDDDDDDDDDEDDDDEDDDEDDDDEEDEEEVDSEAEKDHRRHRRRRRADYDEDDDDDS
EGQEFDPEDDDDMDMDDDEQKQDEDDMEEDGRWDSDPEPPVLLVSDLNDELLSGSYLTVT
LQRPHKAARHSGSIVPKLEAAMAPRTAAGGGGPQGFVQRKAALSKPSRLRSADSETPRGP
GRPRLRGSHGDRGSRAPSASSSEEEAAAPPASSLLSLPSFRDVGGDRGGEKEVWVSVFRH
LNRAELLACMTVCKAWYKWSCDKRLWSHIDVSRCSPLSNQALAGIVKRQPSSLDLSWTPL
ARRQLNCLLTRLPGLRELRLAGLPWSCLSALVSPSLPQLRLLDLRWCEGISDAQIKEIVM
PPGSESSRSRLRGMTAFYLSGLDVGESTLRLLQRHMPQLQRLDVAHCKSISDSCISMLAA
SGTHTRHSLGELTLAGCNELTDSCLLSLKRLSSLVLLDLRGCRGVSRRACDAFISDLSHV
ALYCMMEEKLIQRLD
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggatccgcctactcgtggcggtgaggtttacaatcgcgtgtctgaggtgtgg
acgcctggcagaagagacggaccacagagggcgcaacacctgtcggatcgccgccggtgt
gctcaagcgccccttttctctgcagtcatgggtcgggctggtacccggcggcgttaccat
gacgacggaatctcggatgaggagatcgagggccgcaggacgtttgacctggaggagaag
gtcagcggtcagaggttcggctctgaccgggtggtccgcatggcgggcaaagacttcacc
tacgagtacatccagagaggcggcctgagggatcccatcatgttcgataaacccgagggg
ctgggaatcatgatgccggatcccgacttcagcgtcaacgacgtcaagatgttcgtcggc
agcagacgcatgattgacgtgatggacgtgagcactcagaaggggacagagatgtccatg
gcccagtggacccgttactacgagacccccgtgtgtcagagagagaaactctacaacgtc
atcagcctggagttcagccacaccaagctggagaacctggtgaagagacccaccacgctg
gatctcatagactgggtggacaacatgtggcctcgtcacctgaaggagcggcagagagac
tccaccaactgcatcaacgacatgcagtaccccaaagtgcagaagtactgcctgatgagc
gtgcagggctgctacacggacttccacatcgacttcggaggaacctcggtgtggtatcac
attctcagggggaccaaggtgttctggctgatccctcccacccaccagaacctggagctg
tacgagaactgggttctgtcggggaagcagggggacgtgttcctgggagaccgcgtgtcg
gactgtcagaggatccagctgaagcagggcagcaccttcatcatcccgtcaggttggatc
cacgccgtctacacccccgtggactccatggtgttcggaggaaacttcctgcacagcttc
aacatccccatgcagctgaacatctgcaacatcgaggaccggacccgggtcccgctgaag
ttccgctacccgttcttctacgagatgtgctggtacgtgctggagcgctacatcttcagc
ctgacccggacctcctacctcaccccagagtttcagaaacactccctgggcatcggtctg
aagaggcctccgggcgccgacgccatggacctggaggacgagcaggaggatgagcaggag
gatctaccgttacaaccgtctgagacctacctgacccccctggagctggagggactgtgg
aacctgctggggaaactggaggccatgccttccaacaagaaatgtgtccccgccgggatc
ctgaacgcctctgccctcgtcaatcacgtcaaggcacatctgagggaacacgcgagtgac
aacccccagcagtcctacacaggacgacccatcatcacctggcccaagaggccctcgtgg
taccagcctcctcctcctccacctcccccccctcgtcccaagctggccaccacgcccatc
gtcccccggccccagaaacctccttcctccatgtcggtgctcaggcggcggcgagtcagg
tgcaagcgctgcgaggcctgcgtgaggccggagtgtggagactgcaacttctgcagagac
atgaagaagttcggaggaccggggaagctgaagcagacctgcgtgctgcgccagtgtctc
tctccgggcctgcccctatcagccgtctgtgagatctgcaaggagcccaaccaggaggag
accggagacccgtccctcaccctcatggagtgctccaactgtgcccagatcgtccacccc
gcctgtctcatggttcagggtgaaggcgtgatcagcaaggacctgcccagctgttgggag
tgccccaagtgtgtccaggggatcacggagcgagagtgtaaaggcgacagaggcgacggt
cttcccgcgaagaggaagtcttcgtccctactggacgctcgcatgacgaagatctaccgc
cggcaccagcacagccgtgacggggacgactcggacagcgacgacgacgacgaagcgtct
cacaggaggaagatggggctctctgcacgcgccggctcctccaggaggcccctgagtgcc
cagaggagaggcctgctgagaggaggctccgcccacagagggggcctgatggcgtcgggc
tccgcccccgtcttcaagctgaagagaggggtgggggccaaggaggtcggccggaggggg
cggggcgtccggctgcgaggaggctcacgcatgcagcggaggggagacgactcggaggac
tccgacgatgacgacgacgacgacgacgatgatgacgaggacgacgacgacgaggatgac
gatgaagatgacgacgacgaggaggatgaagaggaggtggacagcgaagcggagaaggac
caccggcgacacaggaggagacgcagggccgactacgacgaggacgacgacgacgacagc
gaggggcaggagttcgaccccgaggacgacgacgacatggacatggacgacgacgagcag
aagcaggacgaggacgacatggaggaggacggccgctgggattcagacccggaacctccg
gtgctgctggtgtcggacctgaacgacgagctgctgagcggctcctacctgacggtgact
ctgcagcgcccccacaaggccgccaggcactccggctccatcgttcccaagctggaggcg
gcgatggctccgaggacggctgcagggggaggaggtccgcagggcttcgtgcagagaaaa
gctgctctgtccaaaccgtcgcggctgcggtccgccgactccgagaccccgagaggaccc
ggcaggcctcgtctgcgcggtagccacggtgacagaggcagcagggctccatcggcgtct
tcatcggaggaggaggctgcggctccgcccgcgtcctccctgctgtcgctgccgtccttc
cgagacgtcgggggagaccgcgggggcgagaaggaggtgtgggtgtcggtgttcaggcac
ctgaacagggcggagctgctggcctgcatgaccgtctgcaaggcctggtacaagtggagc
tgcgacaaacgcctgtggagccacatcgacgtgagccgctgcagcccgctctccaaccag
gccctggccggcatcgtcaagcgccagccgtcctccctggacctgtcctggacgcccctg
gcccggaggcagctcaactgcctgctcaccaggctcccaggtctgagggagctgaggctg
gccggtctgccctggtcctgtctgtccgccctggtgtcccccagtctgccgcagctgagg
ctgctggacctgcgctggtgcgagggcatcagcgacgcccagatcaaagagatcgtcatg
ccgccagggtccgagtcgtcgcggagcagactgaggggcatgactgcgttctacctgtcc
ggcctggacgtgggcgagtccacgctgaggctgctgcagcgccacatgccgcagctgcag
aggctggacgtggctcactgcaagagcatctcagactcctgcatctccatgctggcggcc
agcggcacgcacacccgccacagcctgggggagctcacgctggcaggctgcaacgagctg
acggacagctgcctgctgtctctgaagcgtctgtcctccctggttctgctggacctgaga
ggttgccggggcgtcagcagacgagcctgcgacgccttcatctccgacctgtcccacgtg
gccctctactgcatgatggaggagaagctcatccagcgcctggactga
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