Cololabis saira (Pacific saury): 133446945
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Entry
133446945 CDS
T09849
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04010
MAPK signaling pathway
csai04020
Calcium signaling pathway
csai04510
Focal adhesion
csai04540
Gap junction
csai04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133446945 (pdgfrb)
04020 Calcium signaling pathway
133446945 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133446945 (pdgfrb)
04540 Gap junction
133446945 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
133446945 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
csai01001
]
133446945 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
csai04090
]
133446945 (pdgfrb)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
133446945 (pdgfrb)
Protein kinases [BR:
csai01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
133446945 (pdgfrb)
CD molecules [BR:
csai04090
]
Proteins
133446945 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
Ig_2
I-set
ig
C2-set_2
PKD
Ig_VEGFR-1-like_5th
VEGFR-1-like_Ig-like
RIFIN
Motif
Other DBs
NCBI-GeneID:
133446945
NCBI-ProteinID:
XP_061581163
LinkDB
All DBs
Position
7:complement(24839177..24870603)
Genome browser
AA seq
1106 aa
AA seq
DB search
MRRVTASVLHLAVTFTALLYLCTNVHCLEIVPDVKELILTEGSSLTLNCSGSKDTTWDFK
REDVPYIQVDPFQNDHKSYEIVQSGATSSVLILRSVGWKHTGVYQCVDRLTGETKEVAVF
VPDPEVWFVESAHGMVTKTSDESTVPCVVTNPNISVTLYERDTETPIKGQYVPSEGYKAP
LEDRTYFCEGELNGKLKQSQVFYVFSIVVPETIDAYVNASKTVLKQGEPLTVNCTVHGVQ
LVFFTWDIPNGAPQAVEPLTDVLSATSIRSSMIYPQTQVAQSGNYICHVHEGVQDQMSYA
SVNITVLERGFVHTNPAQHQNISAKLQENVELRVEMEAYPPPQIRWTKDGVTIKGDKSST
IRQEHEIRYVTILTLVRVRVEQKGLYTVIITNEDVTKHLIFNLEVQVPSQVKDLIDHHIP
GKRHLVTCTAEGVPPPTIQWYSCDSMLKCNNQSAVWHPLTPQPEELSIQTNVSYSEERKI
SRVRSQLTFLKPQQVTVRCETTNKAGLIDRRDVKLVSSTLFTQVEVLAAVLALVVIVILS
IIILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLALGRTLGS
GAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLL
GACTKNGPLYLVTEYCRYGDLVDYLHRNKHTFLQNYAEKNQDSGCLVSGGSTPLSQRKGY
VSFGSESDGGYMDMSKDEPSVYVPMQEQIDTIKYADIQPSPYESPYQQDLYQEQGGSRLD
LVICDSPYLTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLAR
DIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPM
NEVFYSALKRGYRMAKPAHASDEIYDIMKKCWDEKFEKRPEFSHLVHSVGNMLTDSYKKT
YSQVSENFLKSDHPAVARTKPRLSSPFPIANPAFGSPSPVSGSSPPPGPHYQSQRPADLR
QEAGAQEVLTSYNEYIIPIPDPKPEDVFSGGMSESPGSSLALEEETDSMSQDTADTLPEE
DRLEESSERDALLGRSGTPEVEDSFL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtgacagcgtcggtgctccacctggcagttacatttacagctttgctgtat
ctttgcactaatgtgcactgtctggagatcgtaccggatgtgaaagagctcatcctgact
gaaggctcctccctcaccctgaactgctccggctccaaggacactacctgggactttaag
agggaggacgtgccctacattcaagttgaccctttccaaaatgatcataaaagctacgaa
attgtgcaaagcggagccacttccagtgttctgatcttgaggagcgtgggctggaagcac
accggtgtgtaccagtgtgttgatcgactcactggagagactaaggaggtggctgtgttt
gtcccagatcctgaagtgtggttcgtggagagcgcccatggcatggttaccaagaccagt
gacgaaagtaccgtcccctgtgtggtcactaacccaaacatcagcgtcaccttgtacgag
agggacactgaaacacctatcaaagggcagtatgttcctagtgagggttacaaggcaccg
ctggaggacaggacgtacttttgtgaaggggagctgaatgggaagttgaaacagtcgcag
gtcttctacgtcttcagcatcgttgtcccagagaccatcgacgcctatgtcaatgcctca
aagacagtcctgaagcagggcgagcctctgactgtaaactgcacggtgcacggagttcag
ctggtgttttttacttgggatatccccaatggagcgcctcaagcagttgagccgctgact
gatgtcctgtctgccacgagcattcgctcctccatgatctacccgcagacccaggtggcc
caaagtggaaactacatctgccatgtccatgaaggggtccaagaccagatgtcctatgcc
agcgtcaacatcactgtgctcgaacgaggttttgtgcatacaaaccctgctcagcatcaa
aacatttcagctaagctgcaagagaacgtggagctgagagtggagatggaggcctaccct
cctcctcagatccgctggaccaaagatggcgtcaccatcaagggagacaaaagcagcacc
atccgacaagagcatgaaataaggtatgtcaccatcctgaccttggtgagggtgagagtg
gagcagaagggcctctacacagtcatcattaccaacgaagatgtcacaaagcatttgatc
tttaacctggaagtacaagttccctcacaggtcaaagacctgattgaccaccacatcccg
gggaagaggcacctggtgacctgcacggctgagggcgtcccgcccccgaccatccaatgg
tacagctgcgacagcatgctcaagtgcaacaaccagagcgccgtgtggcatccgctgaca
ccacagccggaggagctgagcatccagaccaacgtgagctacagcgaggagcgtaaaatc
agccgggtgcggagtcaactgaccttcctgaagcctcagcaggtcaccgttcgctgtgag
accaccaacaaagcaggactgatcgaccggagagatgtcaaactggtgtccagcaccctg
ttcactcaggtggaagtcctggctgctgttctggccttggtagtcattgttatcttgtcc
atcatcatcctcattgctgtgtggagaaagaaaccccgctatgagatcagatggaaggtg
atagagtcggtgagccaggacgggcatgagtacatctatgtggaccccatccacctcccc
tatgacctggcctgggaaatgccccgagacaacctggctttgggtcgcactcttggatcg
ggagcatttggccgggtggtcgaggcaactgcgtacggtctcacgcattcccagtccagc
acaaaagtggcagtgaaaatgttgaaatcgacggccaggaggagcgagactcaggcgctg
atgtcagagctgaagatcatgagccacctcggccctcacctcaacatcgtcaacttgctc
ggagcttgcaccaaaaacggtcctctttacctggtgactgaatactgtcgctatggtgac
ctggtggattacctgcacaggaacaagcacaccttcctgcagaactacgctgagaagaac
caagacagcggctgcctcgtttcaggaggaagcacccctctcagtcagagaaaaggatat
gtttcctttggaagtgagagtgacggaggatacatggacatgagcaaagatgagccttca
gtctacgttcccatgcaggaacagatagacaccatcaaatatgcagacatccagccatct
ccgtatgagtccccctaccagcaggacctctaccaggagcaaggtggcagcaggctggac
ttggtgatctgtgactctccttatctcacctatgacgacctgctgggcttcagctaccag
gtggccaaggggatggagttcctcgcctccaagaattgcgttcaccgtgacctggccgcg
aggaacgtgttgatctgtgaaggcaagctggtgaagatttgtgacttcggcctggccaga
gacatcatgcatgattcaaactatatctcaaaaggcagcaccttcctgcccctgaagtgg
atggcaccagagagtattttccataatttgtacaccaccctgagcgatgtgtggtcatac
gggattctgctttgggaaattttcacgctgggaggaaccccctacccggatttgcccatg
aatgaagtcttctacagcgctttgaaaagaggctaccggatggccaaacctgcccacgcc
tcggacgaaatttatgacatcatgaagaagtgttgggatgagaagttcgagaagaggcct
gagttctcccacctggttcacagtgtggggaatatgctaacggacagctacaagaagacg
tacagccaagtgagcgagaacttcctgaagagcgaccacccggcggtggcccgcaccaaa
ccccggctgagctcgccctttcccatcgccaacccggccttcggctccccgtctcccgtc
agcggctcctccccaccacccggaccccactaccagagccagaggcccgcagacctcagg
caggaggccggcgcgcaggaagtcctgacttcatacaacgagtacatcattcccatccca
gacccgaagccagaggacgttttctctggcgggatgtcggagagccctggaagctctctg
gctctggaggaggagactgattccatgtcccaggacacggccgacacccttccagaagag
gaccggctggaggagagcagcgagagggacgctctgctggggcggtcggggacgcccgag
gtagaggacagcttcctgtag
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