Cololabis saira (Pacific saury): 133449238
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Entry
133449238 CDS
T09849
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133449238 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
133449238 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133449238 (lsm3)
03041 Spliceosome [BR:
csai03041
]
133449238 (lsm3)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133449238 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
133449238 (lsm3)
Spliceosome [BR:
csai03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133449238 (lsm3)
Complex C
U2 snRNP components
133449238 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
133449238
NCBI-ProteinID:
XP_061584351
LinkDB
All DBs
Position
8:complement(5239127..5244846)
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AA seq
102 aa
AA seq
DB search
MADDVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtggagcaacaaccgaccaccaacacggtggaggagccgctggatctg
atccggctcagtctggacgagaggatctacgtgaagatgaggaacgaccgggagctgcgg
ggacgcctgcatgcctacgatcagcacctgaacatgatcctgggggacgtggaggagacg
gtgacgacggtggagatcgatgaggagacgtatgaagaactctacaagtctacaaagagg
aacatccccatgctgttcgtgagaggagacggcgtggtcctggtggcaccgccgctccgg
gtgggctga
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