Cololabis saira (Pacific saury): 133459208
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Entry
133459208 CDS
T09849
Symbol
nr1h3
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X1
KO
K08536
liver X receptor alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03320
PPAR signaling pathway
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133459208 (nr1h3)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
133459208 (nr1h3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133459208 (nr1h3)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
csai03310
]
133459208 (nr1h3)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133459208 (nr1h3)
Nuclear receptors [BR:
csai03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
133459208 (nr1h3)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
DUF6279
Motif
Other DBs
NCBI-GeneID:
133459208
NCBI-ProteinID:
XP_061595065
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All DBs
Position
2:complement(17361774..17381230)
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AA seq
468 aa
AA seq
DB search
MSTLSVTDIPDVGHDEGKVFDGASELQLDYMVEESSGGPTLKPDGLLSLTSLSPPNDFPV
PAHNGPSLTDISSPLPVEPNDIKMDPDAGDTPSIIGEKKDGRPAKRKKGPAPKMLGNEVC
SVCGDKASGFHYNVLSCEGCKGFFRRSIIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKC
REAGMLEQCVLSEEQIRLKKMKKQHDEETARTSTVVTPTPPPETATLDPQQHEMIEKLVS
MQKQCNKRSFLDRPKVTPWPQSQDLQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFL
ELTREDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQFEFINPI
FEFSKGMNDLHLDEAEYALLIAINIFSADRPNVQDHDLVERLQQPYVDALRSYIMIKRPN
DHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVNE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgctgtctgtgactgatatcccagatgttggtcatgatgaaggtaaggtgttt
gatggggcgtctgagctgcagctggactacatggttgaggagagcagcggaggccccaca
ctgaagcccgatgggctgctatccctgaccagcctctccccgcccaatgacttccctgtc
cctgctcataatggcccttcactgactgacattagcagtcctctgccagtggagccaaat
gacattaagatggatccagatgcaggggacacaccttccatcataggtgagaaaaaagac
ggccggccagcgaagaggaagaaggggcctgctccaaagatgctaggaaatgaggtgtgc
agtgtttgcggcgacaaggcctctggtttccactacaatgtgctgagctgtgagggctgc
aagggcttttttcgccgaagcatcattaaaagtgcccagtacagctgcaagaacaacggt
cgctgtgaaatggacatgtacatgcgccgcaagtgccagcagtgtcgtctgcgaaagtgt
cgggaggcaggcatgctggagcagtgcgtgctttctgaggagcaaatacgacttaaaaag
atgaagaaacagcacgatgaggaaacagctcgcacatccacagtggtcacacccacccct
ccaccggaaacagccactcttgatccacagcagcacgagatgattgagaagctggtgtcc
atgcagaagcaatgcaacaagaggtctttccttgaccgaccaaaagtgacgccttggcca
cagagtcaggatttgcagaatcgagaagtgcgtcagcagcggttcgcccacttcactgag
ctcgccatcatgtcagttcaagagattgtggactttgctaagcagcttcctggcttcctt
gagctcacaagagaagaccagatcgctctgttgaagacctctaccattgagattatgctg
cttgaaacatctcgacgttacaaccctgccattgaaagcatcacatttctgaaggatttt
agctataataaggaggattttgccaaagcagggcttcagtttgagttcataaaccccatc
tttgagttttccaaaggaatgaatgacctgcaccttgatgaggctgaatatgctctgctc
atcgctatcaacatcttctctgcagatcggccaaacgttcaggaccatgatctggttgag
aggctgcaacaaccatatgtggatgcactgcgctcttacatcatgataaagagaccaaat
gatcatctgatgttcccccgtatgctgatgaaactggtgagccttcgcacgttaagtagt
gttcactcggagcaggtttttgccctacgcctgcaggataagaaacttcccccgctgctg
tctgaaatctgggatgtcaatgagtga
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