Cololabis saira (Pacific saury): 133460030
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Entry
133460030 CDS
T09849
Name
(RefSeq) rap guanine nucleotide exchange factor 6-like isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
133460030
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
ABhydrolase-like_N
Motif
Other DBs
NCBI-GeneID:
133460030
NCBI-ProteinID:
XP_061596487
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All DBs
Position
14:33527641..33673708
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AA seq
1712 aa
AA seq
DB search
MSVLRWHRLSALWKSWIFSQEPAEDQDQISEAPGHEEEPCEKESNTVEVDGSDGQNPKVV
GSQNLDYKKQNSQTDNQNEECIQLSVVPKSEVLKRSCSEPCSQVSICVDRSFSCPHGPAG
SLYQSQRSGFSEDSVDCVLQVDNGSEGDDSFLQREGSQRRSRRRFRRVNPRGERELITDG
QEPASYNTLPADLNKMHLTDHAHHQVMHMAPSQSGCSIASDSGSSSLSDIYQATESELGD
VDLSGLPEAAVDSEEEEEEDEDLERASDTLLGRDLVRECLEKDPADRNDDDIEQLLEFMH
QLPAFANMTMSVRRDLCSVMVFEVVEQAGTVILQDKRELDLWYVILNGAVEISHPEGRVE
TLCMGNSFGISPSLDKQYMIGEVRTKGDDCQFVCVAQEDYCRILNHVEKNTHKVEEEGEI
VMVKEHRELDRTGTRKGHIVIKGTPERLIMHLVEEPSVVDPTYIEDFLLTYRTFLSSPMD
VGKKLLEWFQVDSLRDTVTRIVLLWVNNHFNDFEGDQAMTRFLEDFEKRLETTKMKGHLR
LLNIACAAKAKLRQITLQKASRESPLYFSLQGGSERGFGIFVESVEEGSKAAETGLKRGD
QIMEINGQNFENISLSKALDIFRNNTHLSLTVKTNIFVFKELLSRILHEKKNGGPHIPKI
QEKKGNRFSIPDLPGDMEFPTDHKSTRKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSD
GGIGQSQDDSIVGTKQCRHSVAIMPIPSNLSSSSPDLLQPATSVLDFSNPAALGLYYIPD
QVIRVFKADQQSCYIIISKDTTAKDVVAHTVNEFGLLAAPETYSLCEVSVSPEGVIKQRR
LPDQLSKLADRIQLNGRYYLKNNMETETLCSDEDAQDLLRESQISLLQLSTMEVAAQLSM
RDFELFRNIESTEYVDDLFKLDSAAGSRNLKQFEEVINQETFWVATEILKEPNTLKRMKI
IKHFIKIALHCKECKNFNSMFAIISGLNLAPVARLRNSWEKLPSKYEKLFGDLQDVFDPS
RNMAKYRNVLSSQSMQPPIIPLFPVVKKDLTFLHEGNDSNVDGLINFEKLRMIAKEIRHV
VRMTSANMDPALMFRQRKKRWKSLGSLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLY
EDAQMARKVKQYLSNLTVETDEEKHQIMSLQCEQSHSAPGKNLSERRSTKSDMSPVSLRS
ALPSGKAQNRVSQVLQVQVPLNPLRKKSNAKDIGVSISNSPQVVKKPPVNSSDDWNSKRP
CDDTVSMVSSLHSSPTVSPQGSPRKVGGVAKSHNSSQMNLSGSSSSLTSDASTKTGTVSL
RSYGIGYALLPAGKADNLSDSSHSEISSRSSICSVDSVPAPGLDERCNRTCTTAPTTATV
PPAAAATPTAVPESAAASHAHLNADYRQPCTSSSSSLARGCVARACTFSSSISTEELTPE
HGSLDLVVDSGRGSWTSCSSNSHDSFQSLPASSCRPWDHGIHGHPLSLPHTHLGFKHTQP
ARPAAEAEGARPAWAGESPVKHHSRDSSSDLSAQVRQSWASSSSLSDNYDGNFGTIKRRN
TSEHPSSPANDEGGQSTDPVYKTVTSSTEKGLIVYCVTSPAKDERYRAPPPTPPGYQGLA
LGDLDGVVGGPGGLVPRPPHLKPPDYSVALQRSKLLQSPAAAGGLAEARRLHFQHQDGRT
AGSSEGHSRPASICCPPKDLAESEDDEQVSAV
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgctccgctggcaccggttgtctgcgctctggaagagctggatattcagccag
gagccagcagaagaccaggaccagatctcagaagctcctgggcatgaagaagagccatgc
gagaaagaaagcaacacagtcgaggttgacggctcagacgggcagaatccaaaagtagtt
ggaagccaaaacttggattataaaaagcaaaactctcaaactgacaaccaaaacgaggaa
tgtatacaactgagtgtggttcccaagtctgaagtgctgaaacgcagctgctccgagccg
tgttcccaggtctccatctgtgtggatcggtcgttcagttgcccccacggacctgccggt
tctctgtaccagtcccaacgaagcggtttttctgaggacagtgttgactgtgtattacag
gtggataacggcagcgaaggggacgacagcttcctacaaagagaggggtcccaacggcgg
tctaggcggcgctttaggagggtaaaccccagaggagagcgggaacttatcacagatggc
caggaacccgccagctacaacactcttcctgctgacctgaataagatgcacttaacagac
cacgcccaccaccaggtgatgcacatggctcccagccaatcaggatgcagcatcgccagt
gattcagggagcagcagcttgtcagacatttaccaggccacagagagcgagctcggagat
gtggatctgtctggacttccagaagctgcagtggacagcgaggaagaagaggaggaagac
gaagacctggagagagcctcggacacccttttgggacgagatctggtccgagagtgtctg
gaaaaagatccagctgaccgcaatgacgacgacattgagcaactgctggagttcatgcat
cagctgcctgccttcgccaacatgaccatgtcggtgcggcgggacttgtgcagcgtcatg
gtgttcgaggtggtggagcaggcaggcaccgtcatactgcaagacaaacgagagctggac
ctctggtatgtaatcctgaatggagcagttgaaatcagccatccagaaggaagagtagag
actctttgtatgggaaacagttttggcatctcaccgtcattggacaagcagtacatgata
ggagaagttcgcaccaagggggacgactgccagtttgtgtgcgtcgcccaggaggactac
tgccgcatcctcaaccatgtggagaagaacacgcacaaggtggaagaggagggggagatc
gtgatggtgaaggagcaccgcgagcttgatcgcactgggacaaggaaggggcacattgtc
atcaagggaactccagagcgactgatcatgcacctggtggaggagccttcggtggtggac
cccacttacatagaggacttcctactgacctacagaaccttcctgtcgagtcccatggat
gtcgggaagaagctgctggagtggtttcaggtggacagcctgcgcgacacggtaacgaga
atagtgttgctgtgggtcaacaaccacttcaacgacttcgagggcgatcaagctatgacg
cgcttcctggaggattttgagaaacgtctagaaaccacaaaaatgaagggccatttgagg
ctgttgaacattgcgtgtgcagccaaggcgaagttgagacagatcacgctgcagaaggca
tccagggagtcgccgctctactttagcctgcagggcggcagtgaaagaggatttgggatc
tttgttgaatcggtggaagaaggaagcaaagctgcagagaccggacttaagcggggagat
cagatcatggagatcaacggccagaactttgagaacatctccttgtccaaagccctcgac
atctttagaaacaacacccacctctccctcacagtcaaaaccaacatatttgtgttcaaa
gagctccttagtaggatcctacacgagaagaagaatgggggccctcacatccccaagatc
caagagaaaaaagggaatcgcttctccatccccgatcttcctggagacatggaattccct
acagaccataagagcactcggaaaatgaaggccaacactgtgtcgggagggcgaaataag
atcagaaagatgctggagaagacgcgtttcagcatactccccccgaaacccttcagcgat
ggcggcattggccagtctcaggatgacagcattgtgggaaccaagcagtgtcgtcacagc
gtggccatcatgccgattcccagcaacctctcatccagcagcccagacctgctgcaaccg
gcaaccagcgtcctggacttctccaaccccgccgccttggggttgtactacatcccagac
caggtcatccgggtgttcaaagcggatcagcagagctgctacatcatcatcagcaaggac
acgactgccaaggatgtcgtcgcccacaccgtcaatgagttcggcctgctcgcagcgcct
gaaacctactctttgtgtgaggtatcggtcagccccgagggagtcataaaacagcgacgc
ctgcccgaccagctttctaaactggctgatcggattcagctcaacggcaggtattacctg
aagaacaacatggagacggagacgttatgttcagacgaggacgcccaggatctcctcaga
gagagtcagatctctctgctgcagctcagcaccatggaagtcgctgcccagctctccatg
agggacttcgagctcttcaggaacatcgaatccacagagtatgtggatgacttgtttaag
ctcgactccgccgctggaagtagaaacctgaaacagtttgaggaggtgataaaccaggag
accttctgggtcgccacagagatcctaaaggagcccaacaccctgaagaggatgaagatc
attaagcacttcatcaagatcgccctgcactgcaaagagtgcaagaacttcaactccatg
tttgctatcatcagcgggctgaacttggcaccggtggctcgactgaggaactcgtgggag
aaattgcccagtaagtacgagaagctgttcggggacctgcaggacgtcttcgacccatcc
aggaacatggccaagtatcgcaatgtgctgagcagccagagcatgcagccacccatcatc
ccactgttccccgtggtgaagaaggacctcacgttcttacacgaaggcaacgactccaac
gttgacggtctcataaactttgagaagctgaggatgatcgctaaagagatcaggcacgta
gtgcggatgacctcggccaacatggaccccgccctcatgttcagacagaggaagaagagg
tggaaaagtttagggtctttgagtcagggcagcaccaactccaatatgctggatgtgcag
ggcggagctcacaagaagcgagtgcgtcgcagctctctcctcaacgccaagaagttgtat
gaagacgctcagatggccagaaaggtgaagcagtacctgtccaacctaacggtggagacg
gacgaagagaaacaccagatcatgtccctgcagtgcgagcagtctcacagcgccccgggg
aagaacttgagcgaacggcgatccaccaagtcggacatgtcgccagtgtctctgcgatca
gctctgccctctgggaaagcgcagaacagggtgtcgcaagtcctccaggtccaggtgccg
ctgaatcctctgcggaagaagagtaacgccaaagacataggagtctctatttccaactct
ccgcaggtagtgaagaaacctccagttaactcgtcagacgactggaacagcaagagacca
tgtgatgacaccgtttccatggtttcatcccttcactccagccccaccgtgtcgcctcag
gggtccccgcggaaagtgggaggtgtggcaaagtctcacaactccagccagatgaactta
tcaggatcttcatcatcactgaccagcgatgccagcacaaagaccggcaccgtcagcctg
cgtagctacggaataggttacgctctccttcccgctggtaaagcggacaacctgtcggat
tcgagtcacagtgagatttcgtcccgctccagcatctgctcggtggactcggtgccggcc
ccggggctggacgagcgttgcaacaggacctgtactactgctcctactactgccactgtc
cctcctgctgctgctgctacacccactgcagttcctgagagcgcggccgcatcacatgca
cacttaaatgctgattacaggcagccctgcacaagtagttcttcgtcgttggctcgaggg
tgcgtggcacgagcgtgcaccttcagctcctccatctcgacggaggagctgaccccggag
cacggctccctggacctggtagtggacagcggccgcggcagctggacgtcctgctcctcc
aactctcacgactccttccagagcctccccgcctcgtcctgccggccctgggaccacggc
atccacggccacccgctctccctccctcacacgcacttgggcttcaagcacacgcagccg
gccaggccggcagcggaggcggagggcgccaggcccgcgtgggccggcgagagccccgtc
aagcaccactccagagactccagctcggatctgtccgctcaggtgcggcagagctgggcg
tcgtccagctcgctgtcggacaactacgacgggaactttggcacaattaagcgacgaaac
acctcagagcacccctcctcaccggccaatgacgaaggagggcaaagcacagaccccgtc
tacaaaacggtgacgtcaagcacagagaagggcctaatagtgtactgtgtcacctccccc
gccaaggacgagcgttaccgtgctccccctcccacccctccaggctaccaaggtctggct
ctgggagatctggacggagtggtgggaggcccgggaggtctggtcccgcggcccccccac
ctcaaacctccggactacagcgtggccctgcagaggagcaagctcctgcagagtccggcg
gcggccggaggtctggccgaggcccggaggcttcacttccagcaccaagacggccggaca
gccggctccagcgagggccactccagacccgccagcatctgctgcccaccgaaggacctg
gccgagagtgaggacgatgaacaggtttcagcggtttga
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